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BioLiP
>protein
KMSFGEALEVLKQGMQVYRSGWNGKNMFLFLKSSDALASPVFGNIIFIKTADNKIHAWVPSQTDVLAEDWDIVS

The query sequence (length=74) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8smg:B 76 76 1.0000 0.9737 0.9737 6.23e-49 8smf:C, 8smf:H
2 8smf:E 84 84 0.9730 0.8571 0.8571 1.05e-45 8smf:D, 8smf:F, 8smf:B, 8smf:A, 8smf:G
3 8kbj:B 104 102 0.5000 0.3558 0.3627 2.19e-14 8kbj:A, 8kbj:C, 8kbj:D, 8kbk:A, 8kbk:C, 8kbk:D, 8kbk:B, 8kbl:A, 8kbm:A, 8kbm:B, 8wjc:A, 8wjc:D, 8wjc:B, 8wjc:C
4 8wjd:A 101 94 0.4324 0.3168 0.3404 1.43e-13
5 8ptk:f 4502 32 0.1622 0.0027 0.3750 0.26 8ptk:e
6 7z8f:e 4579 32 0.1622 0.0026 0.3750 0.26 5owo:A, 8pr2:f, 8ptk:m, 8ptk:n, 7z8f:f, 7z8f:m, 7z8f:n, 7z8h:A
7 7lgp:B 377 31 0.1351 0.0265 0.3226 2.7 7lgp:A
8 1gpe:B 587 21 0.1216 0.0153 0.4286 3.7 1gpe:A
9 5fw4:A 368 20 0.1216 0.0245 0.4500 5.0 5fw4:B
10 8jtz:A 530 33 0.1757 0.0245 0.3939 5.4 8jtt:A
11 6xut:A 589 20 0.1081 0.0136 0.4000 5.7 6xuu:A, 6xuv:A
12 3tlk:A 296 47 0.1892 0.0473 0.2979 7.6 3tlk:C, 3tlk:B
13 4o23:A 376 29 0.1216 0.0239 0.3103 9.8 4o23:B, 4ppz:A, 4pqa:A, 5uej:A, 5uej:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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