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BioLiP
>protein
KMSFGEALEVLKQGMQVYRSGWNGKNMFLFLKSSDALASNEPVFGNIIFIKTADNKIHAWVPSQTDVLAEDWDIVS

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8smg:B 76 76 1.0000 1.0000 1.0000 1.62e-52 8smf:C, 8smf:H
2 8smf:E 84 84 0.9737 0.8810 0.8810 1.28e-47 8smf:D, 8smf:F, 8smf:B, 8smf:A, 8smf:G
3 8kbj:B 104 102 0.5132 0.3750 0.3824 1.16e-15 8kbj:A, 8kbj:C, 8kbj:D, 8kbk:A, 8kbk:C, 8kbk:D, 8kbk:B, 8kbl:A, 8kbm:A, 8kbm:B, 8wjc:A, 8wjc:D, 8wjc:B, 8wjc:C
4 8wjd:A 101 97 0.4079 0.3069 0.3196 8.49e-12
5 8ptk:f 4502 32 0.1579 0.0027 0.3750 0.30 8ptk:e
6 7z8f:e 4579 32 0.1579 0.0026 0.3750 0.31 5owo:A, 8pr2:f, 8ptk:m, 8ptk:n, 7z8f:f, 7z8f:m, 7z8f:n, 7z8h:A
7 5fw4:A 368 24 0.1316 0.0272 0.4167 0.93 5fw4:B
8 2e46:A 157 31 0.1711 0.0828 0.4194 2.3 2e47:A, 2e47:B
9 7lgp:B 377 31 0.1316 0.0265 0.3226 3.2 7lgp:A
10 5ja2:A 1238 36 0.1842 0.0113 0.3889 4.2 5ja1:A, 5t3d:A
11 3tlk:A 296 41 0.1711 0.0439 0.3171 5.9 3tlk:C, 3tlk:B
12 8eg3:A 554 33 0.1579 0.0217 0.3636 7.0 1p49:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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