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BioLiP
>protein
KMSFGEALEVLKQGMQVYRSGWNGKNMFLFLKSSDALASDFPVFGNIIFIKTADNKIHAWVPSQTDVLAEDWDIV

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8smg:B 76 75 0.9733 0.9605 0.9733 7.47e-50 8smf:C, 8smf:H
2 8smf:E 84 84 0.9867 0.8810 0.8810 1.74e-47 8smf:D, 8smf:F, 8smf:B, 8smf:A, 8smf:G
3 8kbj:B 104 102 0.5067 0.3654 0.3725 3.31e-15 8kbj:A, 8kbj:C, 8kbj:D, 8kbk:A, 8kbk:C, 8kbk:D, 8kbk:B, 8kbl:A, 8kbm:A, 8kbm:B, 8wjc:A, 8wjc:D, 8wjc:B, 8wjc:C
4 8wjd:A 101 97 0.4267 0.3168 0.3299 1.22e-12
5 8ptk:f 4502 32 0.1600 0.0027 0.3750 0.26 8ptk:e
6 7z8f:e 4579 32 0.1600 0.0026 0.3750 0.26 5owo:A, 8pr2:f, 8ptk:m, 8ptk:n, 7z8f:f, 7z8f:m, 7z8f:n, 7z8h:A
7 5fw4:A 368 24 0.1467 0.0299 0.4583 0.28 5fw4:B
8 5gza:A 290 36 0.1867 0.0483 0.3889 0.85
9 7lgp:B 377 31 0.1333 0.0265 0.3226 2.8 7lgp:A
10 8v87:3 656 33 0.1600 0.0183 0.3636 4.6 8v84:3
11 4gs1:B 376 24 0.1200 0.0239 0.3750 6.9 4gs1:A
12 8ro0:A 2231 34 0.1467 0.0049 0.3235 7.1 8ro1:A
13 6ql9:D 1765 48 0.1733 0.0074 0.2708 7.9 3hmj:A, 3hmj:B, 3hmj:C, 8prv:A, 8prv:B, 8prw:A, 8prw:B, 8prw:C, 8prw:D, 8prw:E, 8prw:F, 8ps1:A, 6ql6:F, 6ql6:E, 6ql6:D, 6ql6:C, 6ql6:B, 6ql6:A, 6ql9:F, 6ql9:A, 6ql9:E, 6ql9:B, 6ql9:C, 6ta1:A, 6ta1:B, 6ta1:D, 6ta1:K, 6ta1:F, 6ta1:I, 6u5u:A, 2vkz:A, 2vkz:B, 2vkz:C, 2wat:A, 2wat:B, 2wat:C, 2wat:D, 2wat:E, 2wat:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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