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BioLiP
>protein
KMSFGEALEVLKQGMQVYRSGWNGKNMFLFLKSSDALASDFGFGFGPVFGNIIFIKTADNKIHAWVPSQTDVLAEDWDIV

The query sequence (length=80) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8smf:E 84 84 0.9875 0.9405 0.9405 5.36e-52 8smf:D, 8smf:F, 8smf:B, 8smf:A, 8smf:G
2 8smg:B 76 80 0.9125 0.9605 0.9125 2.28e-47 8smf:C, 8smf:H
3 8kbj:B 104 102 0.4750 0.3654 0.3725 6.27e-14 8kbj:A, 8kbj:C, 8kbj:D, 8kbk:A, 8kbk:C, 8kbk:D, 8kbk:B, 8kbl:A, 8kbm:A, 8kbm:B, 8wjc:A, 8wjc:D, 8wjc:B, 8wjc:C
4 8wjd:A 101 97 0.4125 0.3267 0.3402 4.61e-13
5 8ro0:A 2231 41 0.1750 0.0063 0.3415 0.037 8ro1:A
6 8i0p:A 2149 41 0.1750 0.0065 0.3415 0.084 8q7q:A, 8q7v:A, 8q7w:A
7 5z57:A 1978 41 0.1750 0.0071 0.3415 0.086
8 8q7x:A 1914 41 0.1750 0.0073 0.3415 0.088
9 7abg:A 2174 41 0.1750 0.0064 0.3415 0.088 7abi:A, 8q91:A, 8rc0:A
10 5z56:A 2232 41 0.1750 0.0063 0.3415 0.088 7aav:A, 7abf:A, 8ch6:a, 7dvq:A, 8i0s:A, 5z58:A
11 8h6k:5B 2253 41 0.1750 0.0062 0.3415 0.089 8h6l:5B, 8i0u:A, 8i0v:A, 8q7n:A, 8qo9:A, 8qpe:A, 7qtt:a, 8qzs:A
12 8c6j:A 2261 41 0.1750 0.0062 0.3415 0.090 6ah0:A, 6ahd:A, 8bc8:J, 6ff4:A, 6ff7:A, 9fmd:A, 8i0r:A, 8i0t:A, 8i0w:A, 6icz:A, 6id0:A, 6id1:A, 4jk9:A, 4jk9:B, 4jka:A, 4jka:B, 5mqf:A, 5o9z:A, 6qdv:A, 8qoz:A, 8qpa:A, 8qpb:A, 8qpk:A, 8r09:A, 8r0a:A, 8r0b:A, 8rm5:A, 8ro2:A, 7w59:A, 7w5a:A, 7w5b:A, 5xjc:A, 5yzg:A, 6zym:A
13 8qp8:A 1918 41 0.1750 0.0073 0.3415 0.091
14 8y6o:C 2227 41 0.1750 0.0063 0.3415 0.091 8h6e:5B, 8h6j:5B, 8qp9:A, 6qw6:5A, 6qx9:5A, 8qxd:A, 8r08:A
15 8ptk:f 4502 32 0.1500 0.0027 0.3750 0.23 8ptk:e
16 7z8f:e 4579 32 0.1500 0.0026 0.3750 0.23 5owo:A, 8pr2:f, 8ptk:m, 8ptk:n, 7z8f:f, 7z8f:m, 7z8f:n, 7z8h:A
17 5gza:A 290 40 0.1875 0.0517 0.3750 0.59
18 7lgp:B 377 31 0.1250 0.0265 0.3226 3.3 7lgp:A
19 3aib:G 844 36 0.1500 0.0142 0.3333 3.8 3aib:A, 3aib:B, 3aib:C, 3aib:D, 3aib:E, 3aib:F, 3aib:H, 3aic:A, 3aic:B, 3aic:C, 3aic:D, 3aic:E, 3aic:F, 3aic:G, 3aic:H, 3aie:A, 3aie:B, 3aie:C, 3aie:D, 3aie:E, 3aie:F, 3aie:G, 3aie:H, 8fg8:A, 8fg8:B, 8fj9:A, 8fj9:B, 8fjc:A, 8fjc:B, 8fk4:A, 8fk4:B, 8fk4:C, 8fk4:D, 8fk4:E, 8fk4:F, 8fk4:G, 8fk4:H, 8uf5:A, 8uf5:B
20 6v73:A 228 32 0.1500 0.0526 0.3750 4.0 6v3u:A, 6v3u:B, 6v72:A
21 8v87:3 656 33 0.1500 0.0183 0.3636 4.6 8v84:3
22 6hiv:DT 239 20 0.1000 0.0335 0.4000 5.2 6hiw:DT, 6hiz:DT, 7pua:DT, 7pub:DT
23 5fw4:A 368 20 0.1125 0.0245 0.4500 5.6 5fw4:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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