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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KMRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYK
VQPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDKNGTAISLE
EKPLEPKSNYAVTGLYFYDNDVVQMAKNLKPSARGELEITDINRIYLEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA
TIEERQGLKVSCPEEIAFRKGFIDVEQVRKLAVPLIKNNYGQYLYKMTKD

The query sequence (length=290) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1h5s:B 291 290 0.9931 0.9897 0.9931 0.0 1h5r:A, 1h5r:B, 1h5r:C, 1h5r:D, 1h5s:A, 1h5s:D, 1h5s:C, 1h5t:A, 1h5t:D, 1h5t:B, 1h5t:C, 1iim:A, 1iim:B, 1iin:A, 1iin:B, 1iin:C, 1iin:D, 1mp3:A, 1mp3:B, 1mp4:A, 1mp4:B, 1mp5:A, 1mp5:B, 1mp5:C, 1mp5:D, 3pkp:A, 3pkp:B, 3pkp:C, 3pkp:D, 3pkp:I, 3pkp:J, 3pkp:K, 3pkp:L, 3pkq:A, 3pkq:B, 3pkq:C, 3pkq:D
2 4b2x:B 302 285 0.7552 0.7252 0.7684 1.64e-168 4arw:A, 4arw:B, 4arw:C, 4arw:D, 4asj:A, 4asj:B, 4asj:C, 4asj:D, 4asy:A, 4asy:B, 4asy:C, 4asy:D, 4b2w:A, 4b2w:B, 4b2w:C, 4b2w:D, 4b2x:A, 4b2x:C, 4b2x:D, 4b3u:A, 4b3u:B, 4b3u:C, 4b3u:D, 4b42:A, 4b42:B, 4b42:C, 4b42:D, 4b4b:A, 4b4b:B, 4b4b:C, 4b4b:D, 4b4g:A, 4b4g:B, 4b4g:C, 4b4g:D, 4b4m:A, 4b4m:B, 4b4m:C, 4b4m:D, 4b5b:A, 4b5b:B, 4b5b:C, 4b5b:D, 5fts:A, 5fts:B, 5fts:C, 5fts:D, 5ftv:A, 5ftv:B, 5ftv:C, 5ftv:D, 5fu0:A, 5fu0:B, 5fu0:C, 5fu0:D, 5fu8:A, 5fu8:B, 5fu8:C, 5fu8:D, 5fuh:A, 5fuh:B, 5fuh:C, 5fuh:D, 1fxo:A, 1fxo:C, 1fxo:B, 1fxo:D, 1fxo:E, 1fxo:H, 1fxo:F, 1fxo:G, 5fye:A, 5fye:B, 5fye:C, 5fye:D, 1g0r:A, 1g0r:B, 1g0r:C, 1g0r:D, 1g0r:E, 1g0r:G, 1g0r:H, 1g1l:A, 1g1l:C, 1g1l:B, 1g1l:D, 1g1l:E, 1g1l:H, 1g1l:F, 1g1l:G, 1g23:A, 1g23:B, 1g23:C, 1g23:D, 1g23:E, 1g23:F, 1g23:G, 1g23:H, 1g2v:A, 1g2v:C, 1g2v:B, 1g2v:D, 1g2v:E, 1g2v:G, 1g2v:F, 1g2v:H, 1g3l:A, 1g3l:C, 1g3l:B, 1g3l:D, 6t37:A, 6t37:B, 6t37:C, 6t37:D, 6t38:A, 6t38:B, 6t38:C, 6t38:D, 6tqg:A, 6tqg:B, 6tqg:C, 6tqg:D, 3zlk:A, 3zlk:B, 3zlk:C, 3zlk:D, 3zll:A, 3zll:B, 3zll:C, 3zll:D
3 5ify:A 293 285 0.7207 0.7133 0.7333 7.41e-162 5ify:B, 5ify:C, 5ify:D, 5ify:E, 5ify:F
4 6n0u:A 295 288 0.7276 0.7153 0.7326 7.54e-162 6n0u:B, 6n0u:C, 6n0u:D
5 4ho9:A 294 285 0.7000 0.6905 0.7123 5.88e-155 4ho3:A, 4ho4:A, 4ho5:A, 4ho5:B, 4ho6:A, 4ho8:A, 4ho8:B, 4ho8:C, 4ho8:D, 4ho9:B, 4hoc:A, 4hoc:B
6 1mc3:A 291 287 0.6655 0.6632 0.6725 3.87e-140 1mc3:B
7 1lvw:A 295 286 0.6069 0.5966 0.6154 5.36e-131 1lvw:B, 1lvw:C, 1lvw:D
8 6b5e:B 286 284 0.6069 0.6154 0.6197 4.80e-130 6b5e:A, 6b5e:C, 6b5e:D, 6b5e:E, 6b5e:F, 6b5e:G, 6b5e:H, 6b5k:A, 6b5k:B
9 3hl3:A 246 233 0.3828 0.4512 0.4764 8.18e-66 4ecm:A
10 2ggq:A 401 235 0.2345 0.1696 0.2894 3.94e-22 5z09:A, 5z09:B, 5z09:C, 5z09:D
11 3juk:A 265 260 0.2448 0.2679 0.2731 1.71e-21 3juk:B, 3juk:C, 3juk:D
12 2ux8:G 288 268 0.2586 0.2604 0.2799 2.55e-17 2ux8:B, 2ux8:C, 2ux8:D, 2ux8:E, 2ux8:F
13 8f73:E 281 276 0.2448 0.2527 0.2572 3.16e-16 8f73:A, 8f73:B, 8f73:C, 8f73:D, 8f73:F, 8f73:G, 8f73:H
14 8b6d:A 291 249 0.2172 0.2165 0.2530 4.90e-16 8b68:A, 8b6d:B
15 5i1f:A 290 233 0.2103 0.2103 0.2618 1.98e-14
16 7whs:A 366 232 0.1897 0.1503 0.2371 1.68e-12 7whs:B, 7whs:C, 7whs:D, 7whs:E, 7whs:F, 7wht:A, 7wht:B, 7wht:C, 7wht:D, 7wht:E, 7wht:F
17 6k8d:A 290 236 0.1966 0.1966 0.2415 2.90e-12 6ikz:B, 6k8d:B, 6k8d:C, 6k8d:D, 6knj:A, 6knj:B, 6knl:A, 6knl:B
18 5ve7:A 282 269 0.2207 0.2270 0.2379 4.67e-12
19 7x8k:B 367 227 0.1862 0.1471 0.2379 7.61e-12 7x8k:A, 7x8k:D
20 7d72:K 360 267 0.2034 0.1639 0.2210 9.36e-12 7d72:I, 7d72:E, 7d72:F, 7d72:G, 7d72:H, 7d72:J, 7d72:L, 7d73:E, 7d73:F, 7d73:G, 7d73:I, 7d73:J, 7d73:K, 7d73:L, 7d73:H, 7d74:E, 7d74:F, 7d74:G, 7d74:H, 7d74:I, 7d74:J, 7d74:K, 7d74:L
21 4y7u:A 224 237 0.2103 0.2723 0.2574 1.51e-11 4y7v:A
22 2pa4:B 299 239 0.2138 0.2074 0.2594 1.03e-10 2pa4:A, 2pa4:C, 2pa4:D
23 2ux8:A 255 260 0.2207 0.2510 0.2462 3.56e-09 2ux8:H
24 1jyl:A 228 51 0.0862 0.1096 0.4902 2.19e-06 1jyl:B, 1jyl:C, 1jyl:D
25 7d72:A 407 197 0.1655 0.1179 0.2437 6.20e-06 7d72:B, 7d72:C, 7d72:D, 7d73:A, 7d73:B, 7d73:C, 7d73:D, 7d74:A, 7d74:D, 7d74:B, 7d74:C
26 6r8u:A 425 204 0.1897 0.1294 0.2696 6.89e-06 5l6s:C, 5l6s:G, 5l6s:I, 5l6s:L, 5l6v:A, 5l6v:E, 5l6v:G, 5l6v:H, 5l6v:J, 5l6v:K, 5l6v:N, 5l6v:B, 5l6v:C, 5l6v:D, 5l6v:F, 5l6v:L, 5l6v:M, 5l6v:O, 5l6v:P, 6r8b:D, 6r8b:B, 6r8b:A, 6r8b:C, 6r8u:B, 6r8u:D, 6r8u:C, 6shj:D, 6shj:A, 6shj:B, 6shj:C, 6shn:D, 6shn:C, 6shq:A, 6shq:D, 6shq:C, 6shq:B, 6si8:A, 6si8:B, 6si8:D, 6si8:C
27 4jd0:A 245 112 0.1034 0.1224 0.2679 1.83e-05
28 5l6v:I 400 190 0.1759 0.1275 0.2684 5.44e-05
29 6jq8:A 225 161 0.1345 0.1733 0.2422 8.24e-05
30 6jly:E 414 103 0.1034 0.0725 0.2913 1.04e-04 6jly:F, 6jlz:E, 6jlz:F
31 1hm8:A 458 221 0.1793 0.1135 0.2353 4.36e-04 4aaw:A, 4ac3:A, 1g97:A, 1hm8:B, 1hm9:A, 1hm9:B, 7kr9:A
32 4e1k:A 450 210 0.1828 0.1178 0.2524 5.45e-04 4knr:A, 4knx:A, 4kpx:A, 4kpz:A, 4kql:A, 2v0i:A, 2v0j:A, 2v0k:A, 2v0l:A, 2vd4:A, 2w0v:A, 2w0w:A
33 1wvc:A 254 52 0.0655 0.0748 0.3654 7.95e-04 1tzf:A
34 6jlz:I 430 72 0.0621 0.0419 0.2500 0.006
35 6xhq:A 237 57 0.0724 0.0886 0.3684 0.022 6xhq:B, 6xhs:B, 6xhs:E, 6xht:A, 6xht:B, 6xht:E, 6xht:F
36 1yp3:C 435 163 0.1310 0.0874 0.2331 0.031 1yp2:A, 1yp2:B, 1yp2:C, 1yp2:D, 1yp3:A, 1yp3:B, 1yp3:D, 1yp4:A, 1yp4:B, 1yp4:C
37 4fce:A 441 204 0.1724 0.1134 0.2451 0.038
38 2x65:A 334 108 0.0931 0.0808 0.2500 0.064 2x5z:A, 2x5z:B, 2x60:A, 2x60:B, 2x65:B
39 3rsb:B 185 66 0.0655 0.1027 0.2879 0.072 3rsb:A, 3rsb:C, 3rsb:D
40 1vpa:A 221 58 0.0690 0.0905 0.3448 0.072 1vpa:B
41 2oi6:B 452 219 0.1828 0.1173 0.2420 0.10 4aa7:A, 4aa7:B, 1fwy:A, 1fwy:B, 1hv9:A, 1hv9:B, 2oi5:A, 2oi5:B, 2oi6:A, 2oi7:A, 2oi7:B, 3twd:A, 3twd:B
42 6pd2:C 616 52 0.0586 0.0276 0.3269 0.88 6pd1:A, 6pd1:B, 6pd1:D, 6pd2:A, 6pd2:B, 6pd2:D
43 7yh3:D 157 43 0.0517 0.0955 0.3488 1.1 7yh3:A, 7yh3:B, 7yh3:C
44 5tew:A 333 21 0.0379 0.0330 0.5238 1.9
45 8qlp:B 452 67 0.0655 0.0420 0.2836 5.4 8qlp:F, 8qlp:J, 8qlp:N
46 6wlw:U 205 43 0.0552 0.0780 0.3721 5.5 6wm2:U
47 4krh:A 430 132 0.1034 0.0698 0.2273 5.9 4krh:B, 4kri:A, 4kri:B, 4kri:C
48 7v1l:B 221 97 0.0793 0.1041 0.2371 6.8 7v6p:A
49 1r66:A 322 53 0.0621 0.0559 0.3396 8.9 1r6d:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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