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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KMRHKRTSTKSFNMVQAFGLRGPGDLQGNFGDLQLNKLGTEDPRWPQIAELAPTASAFMGMSQFKLTHQNNDDGNPVYFL
RYSGAIKLDPKNPNYNKWLELLEQNIDAYKTFP

The query sequence (length=113) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6g13:B 113 113 1.0000 1.0000 1.0000 1.11e-82 6g13:A
2 7o36:C 113 113 0.5310 0.5310 0.5310 5.31e-35 7n0i:D, 7o35:C, 7o35:D, 7o36:A, 7o36:B, 7o36:D, 7uxz:AAA, 7xxk:A, 7xxk:B, 7xxk:C, 7xxk:E
3 5vug:A 268 69 0.1858 0.0784 0.3043 1.1
4 2tbv:C 321 45 0.1327 0.0467 0.3333 2.0 2tbv:A, 2tbv:B
5 4s3q:A 682 100 0.1858 0.0308 0.2100 3.2 4s3r:A
6 4pof:A 255 36 0.0973 0.0431 0.3056 4.3 5iy0:A, 5iy0:B, 5iy0:C, 5iy0:D, 5iy0:E, 5iy0:F, 4pof:B, 4pof:C, 4pof:D, 4pof:E, 4pof:F, 4pog:A, 4pog:E, 4pog:F, 4pog:K, 4pog:L, 4pog:G, 4pog:H, 4pog:I, 4pog:J, 4pog:B, 4pog:C, 4pog:D, 4ywl:A, 4ywl:B, 4ywl:C, 4ywl:D, 4ywl:E, 4ywl:F, 4ywl:G, 4ywl:H, 4ywl:I, 4ywl:J, 4ywm:A, 4ywm:B, 4ywm:C, 4ywm:D, 4ywm:E, 4ywm:F, 4ywm:G, 4ywm:H, 4ywm:I, 4ywm:J
7 4wcj:A 233 36 0.0796 0.0386 0.2500 4.7
8 2qcx:B 227 27 0.1062 0.0529 0.4444 5.8 2qcx:A, 1to9:A, 1to9:B, 1yak:A, 1yak:B, 1yak:C, 1yak:D
9 4u7e:B 163 58 0.1504 0.1043 0.2931 6.4 4txq:A, 4txq:B, 4txr:A
10 6mrl:D 326 27 0.0708 0.0245 0.2963 7.4 6mrl:A, 6mrl:B
11 2gks:B 529 16 0.0885 0.0189 0.6250 8.1 2gks:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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