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BioLiP
>protein
KMCMNASCGTTSTVEWKKGWPLRSGLLADLCYRCGSAYESSLFCEQFHKDQSGWRECYLCSKRLHCGCIASKVTIELMDY
GGVGCSTCAC

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5yug:E 102 90 1.0000 0.8824 1.0000 8.25e-63 5yug:A, 5yug:B, 5yug:G, 5yuh:A
2 5z28:B 98 90 0.6556 0.6020 0.6556 9.70e-38 5z28:A
3 3v8x:A 853 51 0.1778 0.0188 0.3137 0.100
4 8qoy:A 1036 47 0.1556 0.0135 0.2979 0.81
5 7yet:A 999 29 0.1333 0.0120 0.4138 1.2
6 7yes:A 1369 29 0.1333 0.0088 0.4138 1.3 8jsl:A, 8jsm:A, 8jsn:A, 7yer:A
7 7l7b:D 1148 58 0.2000 0.0157 0.3103 1.9
8 8i23:D 1154 75 0.2222 0.0173 0.2667 2.0 8i24:D
9 8aaf:e 1527 32 0.1444 0.0085 0.4062 3.3 8agt:e, 8agu:e, 8agv:e, 8agw:e, 8agx:e, 8agz:e
10 4wxx:B 1178 50 0.1667 0.0127 0.3000 5.6 3epz:A, 3epz:B, 7lmk:A, 7lmk:B, 7lmk:C, 7lmk:D, 7lmm:A, 7lmm:B, 7lmm:C, 7lmm:D, 3pta:A, 7sfc:A, 7sfd:A, 7sfe:A, 7sff:A, 7sfg:A, 5wvo:C, 4wxx:A, 6x9i:A, 6x9j:A, 6x9k:A, 7xi9:A, 7xib:A, 5ydr:B, 4yoc:A
11 2p4q:A 476 47 0.1889 0.0357 0.3617 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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