Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KLYPLKKLEIILEGAHKEFATDLLDRAGVKGYTIVGNLSGKGSHGMYALIMIIAAVPEELVGPLLEGFQPFFEAHSGVVF
VHDIQVGRPI

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5d4n:B 90 89 0.9889 0.9889 1.0000 2.46e-60 5drk:C
2 5d4o:A 106 100 1.0000 0.8491 0.9000 1.49e-57 5d4n:A, 5d4n:C, 5d4o:C, 5d4o:B, 5d4p:A, 5d4p:C, 5d4p:B, 5drk:A, 5drk:B, 5ds7:A, 5ds7:C, 5ds7:B
3 7r30:B 102 85 0.2556 0.2255 0.2706 0.005 5o3q:A, 5o3q:C, 5o3q:B, 5o3r:A, 5o3r:B, 5o3r:C, 7obj:C, 7r2y:A, 7r2y:B, 7r2z:A, 7r2z:B, 7r2z:C, 7r30:A, 7r30:C, 7r32:A
4 7cyf:D 109 45 0.1778 0.1468 0.3556 0.13 7cyf:E, 7cyf:F, 7egk:D, 7egk:F, 7egk:B, 7obj:A, 7obj:B, 7r2y:C, 7r31:A, 7r31:B, 7r31:C, 7r32:B, 7r32:C
5 5yk1:A 401 54 0.1667 0.0374 0.2778 0.23 5yk0:A, 5yk2:A
6 7o4x:A 103 63 0.2444 0.2136 0.3492 0.26
7 4nwo:A 171 73 0.2222 0.1170 0.2740 0.26
8 1rcq:A 357 41 0.1444 0.0364 0.3171 0.29
9 3d19:A 264 55 0.1778 0.0606 0.2909 0.52 3d19:B, 3d19:C, 3d19:D, 3d19:E, 3d19:F
10 5y78:A 305 36 0.1667 0.0492 0.4167 0.97 5y78:B
11 5zft:A 258 50 0.1778 0.0620 0.3200 1.0 4a5r:A, 4a5r:B, 3b3x:A, 3b3x:B, 5ghy:B, 5ghy:A, 5ghz:B, 5ghz:A, 1i2w:A, 1i2w:B, 3ly4:A, 3m2j:A, 3m2k:A, 3m2k:B, 4n9k:B, 4n9k:A, 4n9l:B, 4n9l:A, 3sh7:A, 3sh7:B, 3sh8:A, 3sh8:B, 3sh9:A, 3sh9:B, 2wk0:A, 2wk0:B, 2x71:A, 2y91:A, 2y91:B, 5zft:B, 5zg6:B, 5zg6:A
12 7p97:AAA 203 52 0.2000 0.0887 0.3462 1.4 7p97:BBB
13 1jg1:A 215 57 0.2222 0.0930 0.3509 1.5 1jg2:A, 1jg3:A, 1jg3:B, 1jg4:A
14 8vhh:A 389 46 0.1556 0.0360 0.3043 2.5 8egy:A, 8egy:B, 8egz:A, 8egz:B, 8eh0:A, 8eh0:B, 8eh1:A, 8eh1:B, 8vhh:B
15 7nrr:AAA 329 37 0.1333 0.0365 0.3243 2.7 7nrr:BBB, 7nsw:AAA, 7nsw:BBB, 7ntd:AAA, 7ntd:BBB, 7nte:A, 7nte:B
16 4jl3:C 182 76 0.2222 0.1099 0.2632 2.7 4jl3:A, 4jl3:B, 4jl3:D
17 5m0p:A 424 31 0.1333 0.0283 0.3871 4.3 4l40:A, 4l54:A, 5m0n:A, 5m0o:A, 5m0o:C, 5m0p:B
18 3nbx:X 481 43 0.1333 0.0249 0.2791 6.5 6q7l:V, 6q7l:W, 6q7l:X, 6q7l:Y, 6q7l:Z, 6q7m:V, 6q7m:W, 6q7m:X, 6q7m:Y, 6q7m:Z, 6sza:B, 6sza:C, 6sza:A, 6sza:D, 6sza:E, 6sza:F, 6szb:D, 6szb:E, 6szb:C, 6szb:B, 6szb:A, 6szb:F
19 6in7:B 174 75 0.2222 0.1149 0.2667 8.4
20 6hqv:A 1555 81 0.2111 0.0122 0.2346 9.4 6hqv:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218