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BioLiP
>protein
KLTLWTTLDPSPNCRIDVDKDSKLTLVLTKCGSQILANVSLLVVKGRFQNLNYKTNPNLPKTFTIKLLFDENGILKDSSN
LDKNYWNYRNYKNAVGFMPNLAAYPKSTTTQSKLYARNTIFGNIYLDSQAYNPVVIKITFNQEADSAYSITLNYSWGKDY
ENIPFDSTSFTFSYIAQE

The query sequence (length=178) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ofr:B 186 186 1.0000 0.9570 0.9570 4.53e-127 8ofr:A, 8ofr:C, 8ofr:D, 8ofr:E, 8ofr:F, 8ofr:G, 8ofr:H, 8ofr:I, 8ofr:J, 8ofr:K, 8ofr:L, 8ofr:M, 8ofr:N, 8ofr:O, 8ofr:P, 8ofr:Q, 8ofr:R, 8ofr:S, 8ofr:T, 8ofr:U, 8ofr:V, 8ofr:W, 8ofr:X
2 6stt:A 178 178 0.7753 0.7753 0.7753 1.41e-99 6stt:B
3 8ofv:F 175 178 0.6910 0.7029 0.6910 5.97e-83 8ofv:L
4 4k6u:B 187 184 0.6461 0.6150 0.6250 1.06e-75 4k6t:A, 4k6t:B, 4k6t:C, 4k6t:E, 4k6t:F, 4k6t:G, 4k6u:A, 4k6u:C, 4k6v:A, 4k6v:B, 4k6v:C, 4k6w:A, 4k6w:B, 4k6w:C, 3n0i:A, 3n0i:B, 3qnd:A, 3qnd:B, 3qnd:C, 3qnd:E, 3qnd:F, 3qnd:G, 1uxa:A, 1uxa:B, 1uxa:C, 1uxb:A, 1uxb:B, 1uxb:C, 1uxe:A, 1uxe:B, 2wbw:A, 2wgt:A, 2wgt:B, 2wgt:C, 2wgu:A, 2wgu:B, 2wgu:C, 4xqa:A, 4xqa:B, 4xqa:C, 4xqb:A, 4xqb:B, 4xqb:C
5 6stu:A 204 195 0.6180 0.5392 0.5641 1.10e-68 8ofs:A, 8ofs:B, 8ofs:C
6 6qu6:A 189 188 0.5730 0.5397 0.5426 4.40e-64 6fjo:A, 6qu8:A
7 7op2:A 187 196 0.5056 0.4813 0.4592 7.01e-47 7op2:D, 7op2:G
8 6g47:A 171 184 0.3146 0.3275 0.3043 6.35e-18 6g47:C, 4xl8:A, 4xl8:B, 4xl8:C
9 1bvn:P 496 77 0.1292 0.0464 0.2987 0.55 1dhk:A, 1hx0:A, 1jfh:A, 1kxq:A, 1kxq:B, 1kxq:C, 1kxq:D, 1kxt:A, 1kxt:C, 1kxt:E, 3l2l:A, 3l2m:A, 1ose:A, 1pif:A, 1pig:A, 1ppi:A, 1ua3:A, 1vah:A, 1wo2:A, 4x0n:A
10 6nbo:A 390 24 0.0562 0.0256 0.4167 1.2
11 6dii:H 616 51 0.1124 0.0325 0.3922 2.6 6dii:A, 6dii:B, 6dii:C, 6dii:D, 6dii:E, 6dii:F, 6dii:G, 6dii:I, 6dii:J, 6dii:K, 6dii:L, 8ey1:D, 8ey1:F, 8ey1:H, 8ey1:J, 8ey1:L, 8ey9:B, 8ey9:E, 8ey9:F, 8ey9:G, 8ey9:H, 8ey9:I
12 8sod:A 941 70 0.1124 0.0213 0.2857 3.2 8soe:A
13 2wbv:B 186 189 0.2135 0.2043 0.2011 8.9 2w9l:C, 2w9l:D, 2w9l:E, 2w9l:F, 2w9l:H, 2w9l:I, 2w9l:L, 2w9l:M, 2w9l:N, 2w9l:Q, 2w9l:R, 2w9l:S, 2wbv:D, 2wbv:A, 2wbv:C, 2wbv:E, 2wbv:F
14 4qiw:B 1069 69 0.1067 0.0178 0.2754 9.1 4qiw:J
15 6kf3:B 1114 69 0.1067 0.0171 0.2754 9.1 9bct:B, 9bcu:B, 6kf4:B, 6kf9:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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