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BioLiP
>protein
KLTLWTTLDPSPNCRIDVDKDSKLTLVLTKCGSQILANVSLLVVKGRFQNLNYKTNPNLPKTFTIKLLFDENGILKDSSN
LDKNYWNYRNGNKNAVGFMPNLAAYPKSTTTQSKLYARNTIFGNIYLDSQAYNPVVIKITFNQEADSAYSITLNYSWGKD
YENIPFDSTSFTFSYIAQE

The query sequence (length=179) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ofr:B 186 186 1.0000 0.9624 0.9624 4.56e-128 8ofr:A, 8ofr:C, 8ofr:D, 8ofr:E, 8ofr:F, 8ofr:G, 8ofr:H, 8ofr:I, 8ofr:J, 8ofr:K, 8ofr:L, 8ofr:M, 8ofr:N, 8ofr:O, 8ofr:P, 8ofr:Q, 8ofr:R, 8ofr:S, 8ofr:T, 8ofr:U, 8ofr:V, 8ofr:W, 8ofr:X
2 6stt:A 178 178 0.7765 0.7809 0.7809 5.90e-103 6stt:B
3 8ofv:F 175 179 0.6816 0.6971 0.6816 2.72e-82 8ofv:L
4 4k6u:B 187 184 0.6536 0.6257 0.6359 3.24e-77 4k6t:A, 4k6t:B, 4k6t:C, 4k6t:E, 4k6t:F, 4k6t:G, 4k6u:A, 4k6u:C, 4k6v:A, 4k6v:B, 4k6v:C, 4k6w:A, 4k6w:B, 4k6w:C, 3n0i:A, 3n0i:B, 3qnd:A, 3qnd:B, 3qnd:C, 3qnd:E, 3qnd:F, 3qnd:G, 1uxa:A, 1uxa:B, 1uxa:C, 1uxb:A, 1uxb:B, 1uxb:C, 1uxe:A, 1uxe:B, 2wbw:A, 2wgt:A, 2wgt:B, 2wgt:C, 2wgu:A, 2wgu:B, 2wgu:C, 4xqa:A, 4xqa:B, 4xqa:C, 4xqb:A, 4xqb:B, 4xqb:C
5 6stu:A 204 195 0.6089 0.5343 0.5590 1.42e-67 8ofs:A, 8ofs:B, 8ofs:C
6 6qu6:A 189 188 0.5642 0.5344 0.5372 1.75e-63 6fjo:A, 6qu8:A
7 7op2:A 187 196 0.5028 0.4813 0.4592 4.86e-47 7op2:D, 7op2:G
8 6g47:A 171 184 0.3184 0.3333 0.3098 1.16e-19 6g47:C, 4xl8:A, 4xl8:B, 4xl8:C
9 6dii:H 616 51 0.1117 0.0325 0.3922 2.6 6dii:A, 6dii:B, 6dii:C, 6dii:D, 6dii:E, 6dii:F, 6dii:G, 6dii:I, 6dii:J, 6dii:K, 6dii:L, 8ey1:D, 8ey1:F, 8ey1:H, 8ey1:J, 8ey1:L, 8ey9:B, 8ey9:E, 8ey9:F, 8ey9:G, 8ey9:H, 8ey9:I
10 8wm6:a 175 67 0.0894 0.0914 0.2388 2.8 8wmj:a, 8wmv:a, 8wmw:a
11 8sod:A 941 70 0.1117 0.0213 0.2857 3.0 8soe:A
12 2wbv:B 186 189 0.2179 0.2097 0.2063 4.0 2w9l:C, 2w9l:D, 2w9l:E, 2w9l:F, 2w9l:H, 2w9l:I, 2w9l:L, 2w9l:M, 2w9l:N, 2w9l:Q, 2w9l:R, 2w9l:S, 2wbv:D, 2wbv:A, 2wbv:C, 2wbv:E, 2wbv:F
13 7kz3:D 439 64 0.1061 0.0433 0.2969 6.0 7kz5:A, 7kz5:B, 7kz5:C, 7kz5:D, 7kz6:A, 7kz6:B, 7kz6:C, 7kz6:D, 7kzd:A, 7kzd:B, 7kzd:C, 7kzd:D, 7kzd:E, 7kzd:H, 7kzd:F, 7kzd:G
14 4qiw:B 1069 69 0.1061 0.0178 0.2754 9.2 4qiw:J
15 6kf3:B 1114 69 0.1061 0.0171 0.2754 9.2 9bct:B, 9bcu:B, 6kf4:B, 6kf9:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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