Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

I-TASSER D-I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK D-QUARK DRfold DRfold2 LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred TCRfinder

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA DeepMSA2 FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP Library
>protein
KLPEAYAIFDPLVDVLPVIPVLFFALAFVVQAAVGF

The query sequence (length=36) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2axt:K 37 36 0.9444 0.9189 0.9444 1.70e-16 3a0b:K, 3a0b:k, 3a0h:K, 3a0h:k, 2axt:k, 5b5e:K, 5b5e:k, 5b66:K, 5b66:k, 7cji:K, 7cji:k, 7cjj:K, 7cjj:k, 7cou:K, 7cou:k, 7czl:K, 7czl:k, 7d1t:K, 7d1t:k, 7d1u:K, 7d1u:k, 6dhe:K, 6dhe:k, 6dhf:K, 6dhf:k, 6dhg:K, 6dhg:k, 6dhh:K, 6dhh:k, 6dho:K, 6dho:k, 6dhp:K, 6dhp:k, 7dxh:k, 5e79:K, 5e79:k, 5e7c:K, 5e7c:k, 7eda:K, 9evx:K, 9evx:k, 8ez5:K, 8ez5:k, 8f4c:K, 8f4c:k, 8f4d:K, 8f4d:k, 8f4e:K, 8f4e:k, 8f4f:K, 8f4g:K, 8f4g:k, 8f4h:K, 8f4h:k, 8f4i:K, 8f4i:k, 8f4j:K, 8f4j:k, 8f4k:K, 8f4k:k, 4fby:K, 4fby:c, 8gn0:K, 8gn0:k, 8gn1:k, 8gn1:K, 8gn2:K, 8gn2:k, 5gth:K, 5gth:k, 5gti:K, 5gti:k, 5h2f:K, 5h2f:k, 4il6:K, 4il6:k, 8ir5:K, 8ir5:k, 8ir6:K, 8ir6:k, 8ir7:K, 8ir7:k, 8ir8:K, 8ir8:k, 8ir9:K, 8ir9:k, 8ira:K, 8ira:k, 8irb:K, 8irb:k, 8irc:K, 8irc:k, 8ird:K, 8ird:k, 8ire:K, 8ire:k, 8irf:K, 8irf:k, 8irg:K, 8irg:k, 8irh:K, 8irh:k, 8iri:K, 8iri:k, 4ixq:K, 4ixq:k, 4ixr:K, 4ixr:k, 6jlj:K, 6jlj:k, 6jlk:K, 6jlk:k, 6jll:K, 6jll:k, 6jlm:K, 6jlm:k, 6jln:K, 6jln:k, 6jlo:K, 6jlo:k, 6jlp:K, 6jlp:k, 5kaf:K, 5kaf:k, 5kai:K, 5kai:k, 3kzi:K, 5mx2:K, 5mx2:k, 7nho:K, 7nhp:K, 7nhq:K, 4pbu:K, 4pbu:k, 4pj0:K, 4pj0:k, 7rf1:K, 7rf1:k, 7rf2:K, 7rf2:k, 7rf3:K, 7rf3:k, 7rf4:K, 7rf4:k, 7rf5:K, 7rf5:k, 7rf6:K, 7rf6:k, 7rf7:K, 7rf7:k, 7rf8:K, 7rf8:k, 4rvy:K, 4rvy:k, 1s5l:K, 1s5l:k, 5tis:K, 5tis:k, 4tnh:K, 4tnh:k, 4tni:K, 4tni:k, 4tnj:K, 4tnj:k, 4tnk:K, 4tnk:k, 4ub6:K, 4ub6:k, 4ub8:K, 4ub8:k, 5v2c:K, 5v2c:k, 4v62:AK, 4v62:BK, 4v82:AK, 4v82:BK, 6w1o:K, 6w1o:k, 6w1p:K, 6w1p:k, 6w1q:K, 6w1q:k, 6w1r:K, 6w1r:k, 6w1t:K, 6w1t:k, 6w1u:K, 6w1u:k, 6w1v:K, 6w1v:k, 6wj6:K, 5ws5:K, 5ws5:k, 5ws6:K, 5ws6:k, 3wu2:K, 3wu2:k, 7yq2:K, 7yq2:k, 7yq7:K, 7yq7:k, 5zzn:K, 5zzn:k
2 8c29:K 37 36 0.8333 0.8108 0.8333 7.12e-15 8c29:k
3 7n8o:K 37 36 0.8611 0.8378 0.8611 1.02e-14 7n8o:k, 7rcv:K, 7rcv:k, 8tow:K, 8tow:k
4 8wql:KD 36 36 0.7778 0.7778 0.7778 3.66e-13 8wql:KE, 8wql:K1, 8wql:k1, 8wql:kD, 8wql:kE
5 8j5k:K 37 36 0.7778 0.7568 0.7778 6.24e-13 8j5k:k, 6jlu:K, 6jlu:k, 7oui:K, 7oui:k, 5xnl:K, 5xnl:k, 5xnm:K, 5xnm:k
6 7ymi:K 37 36 0.7222 0.7027 0.7222 9.07e-13 7ymi:k, 7ymm:1K, 7ymm:2K, 7ymm:3K, 7ymm:4K
7 7y5e:KL 37 35 0.7500 0.7297 0.7714 1.23e-12 7y5e:K6, 7y5e:k6, 7y5e:kL, 7y7a:K9, 7y7a:k9, 7y7a:KE, 7y7a:kE, 7y7a:KO, 7y7a:kO, 7y7a:KZ, 7y7a:kZ, 7y7a:Km, 7y7a:km
8 8wb4:K 37 36 0.7500 0.7297 0.7500 2.07e-12 8wb4:k, 8xlp:k, 8xlp:K, 8xr6:K, 8xr6:k
9 8iwh:K 37 36 0.7500 0.7297 0.7500 2.58e-12 8iwh:k
10 6j3y:K 37 36 0.6944 0.6757 0.6944 2.81e-12 6j3y:k, 6j3z:K, 6j3z:k, 6j40:K, 6j40:k, 7vd5:K, 7vd5:k
11 8bd3:K 37 36 0.7778 0.7568 0.7778 2.88e-12 8bd3:k
12 7pi0:K 37 36 0.7500 0.7297 0.7500 5.62e-12 7pi0:k, 7pi5:K, 7pi5:k, 7pin:K, 7pin:k, 7pin:K1, 7pin:k1, 7piw:K, 7piw:k, 7piw:K1, 7piw:k1, 7pnk:K, 7pnk:k
13 4yuu:K1 37 36 0.6667 0.6486 0.6667 7.48e-12 4yuu:k1, 4yuu:K2, 4yuu:k2
14 6kac:K 37 36 0.7778 0.7568 0.7778 3.12e-11 6kac:k, 6kad:K, 6kad:k, 6kaf:K, 8kde:K, 8r2i:K
15 3jcu:K 37 36 0.6944 0.6757 0.6944 6.24e-11 3jcu:k
16 8eqm:K 37 36 0.6389 0.6216 0.6389 7.52e-11 8eqm:k, 7sa3:K
17 4pfu:B 542 23 0.2778 0.0185 0.4348 5.5 5hm4:B, 4pfu:A, 4pfw:A, 4pfw:B
18 6c12:B 537 35 0.2500 0.0168 0.2571 5.7 6c12:A
19 2acz:A 588 35 0.2500 0.0153 0.2571 5.7 1nek:A, 1nen:A, 2wdq:A, 2wdq:E, 2wdq:I, 2wdr:A, 2wdr:E, 2wdr:I, 2wdv:A, 2wdv:E, 2wdv:I, 2wp9:A, 2wp9:E, 2wp9:I, 2ws3:A, 2ws3:E, 2ws3:I, 2wu2:A, 2wu2:E, 2wu2:I, 2wu5:A, 2wu5:E, 2wu5:I
20 7xu5:B 938 18 0.2500 0.0096 0.5000 8.3 7xu5:A, 7xu5:C

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417