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BioLiP
>protein
KLNVSTEALQKAVKLFSDSSAFSGFSTASGK

The query sequence (length=31) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6hqu:J 31 31 1.0000 1.0000 1.0000 6.32e-15
2 8c3j:C 30 31 0.8710 0.9000 0.8710 1.48e-10
3 4qox:A 462 16 0.3548 0.0238 0.6875 5.6
4 7pu7:A 1070 25 0.3548 0.0103 0.4400 8.2 5lew:A
5 6mat:A 578 24 0.3226 0.0173 0.4167 8.2 6mat:C, 6mat:E, 6mat:B, 6mat:D, 6mat:F, 7swl:A, 7swl:B, 7swl:C, 7swl:D, 7t0v:A, 7t0v:B, 7t0v:C, 7t0v:D, 7t0v:E, 7t0v:F, 7t3i:A, 7t3i:B, 7t3i:C, 7t3i:E, 7t3i:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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