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BioLiP
>protein
KLKQVADKLEEVASKLYHNANELARVAKLLGER

The query sequence (length=33) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2r2v:C 33 32 0.9697 0.9697 1.0000 4.22e-16 2r2v:D
2 2bni:C 34 33 0.6364 0.6176 0.6364 9.44e-10 2bni:D, 1u9h:A
3 1uo4:B 31 31 0.6364 0.6774 0.6774 4.49e-09 1uo5:A
4 1uny:B 30 30 0.6061 0.6667 0.6667 8.15e-08
5 1fav:A 78 28 0.4848 0.2051 0.5714 4.99e-07 6j5e:G, 6tvq:AaA, 6tvu:AaA, 6tvw:CCC, 3vgx:C, 3vu5:A, 3vu6:A, 3w19:C, 5yb4:E, 5yb4:F, 5yb4:D
6 1ysa:C 57 33 0.5758 0.3333 0.5758 5.56e-07 1dgc:A, 2dgc:A, 1ysa:D
7 5apw:B 64 32 0.4848 0.2500 0.5000 2.16e-05
8 5apw:B 64 29 0.4848 0.2500 0.5517 6.08e-05
9 4hjb:C 30 31 0.5152 0.5667 0.5484 9.61e-05 4hjb:D
10 3crp:B 34 33 0.5152 0.5000 0.5152 1.33e-04 2b1f:A, 2b1f:C, 3crp:C
11 1czq:A 45 30 0.4545 0.3333 0.5000 1.54e-04 1gzl:A, 1gzl:B, 3l35:A, 3l35:C, 3l35:B, 3l36:A, 3l37:A, 3mgn:D, 3mgn:F, 3mgn:A, 3mgn:C, 3mgn:E, 3mgn:B, 6psa:A, 2q3i:A, 2r3c:A, 2r3c:B, 2r5b:A, 2r5b:C, 2r5b:B, 2r5d:A, 2r5d:C, 2r5d:B
12 1llm:C 87 31 0.5152 0.1954 0.5484 2.52e-04 1llm:D
13 3i5c:B 198 30 0.4848 0.0808 0.5333 3.78e-04 3i5c:A, 1ij0:A, 1ij0:B, 1ij0:C, 1ij1:A, 1ij1:B, 1ij1:C, 3k7z:A, 3k7z:B, 1rb4:A, 1rb4:B, 1swi:C, 6xne:C
14 1oij:C 238 33 0.3939 0.0546 0.3939 0.21 1oii:C, 1oij:D
15 5lbp:A 196 26 0.3636 0.0612 0.4615 2.0 5l9k:A, 5l9k:B, 5l9q:A, 5l9q:B, 5lau:A
16 6o15:A 355 23 0.3333 0.0310 0.4783 5.1 6o15:B
17 3msu:B 426 23 0.3636 0.0282 0.5217 5.3 3msu:A
18 7dmb:A 358 12 0.2727 0.0251 0.7500 6.9 7dmb:B
19 4dxy:A 406 16 0.2727 0.0222 0.5625 8.6 3nv5:A, 3nv6:A
20 6xl2:A 257 27 0.3030 0.0389 0.3704 9.2 6xab:A
21 2v2q:B 270 31 0.2727 0.0333 0.2903 9.8 2v2q:A, 2v2v:A, 2v2v:B, 2v2z:A, 2v2z:B, 2v34:A, 2v34:B, 2v8p:A, 2v8p:B, 2vf3:A, 2vf3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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