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BioLiP
>protein
KLELRLKSPVGAEPAVYPWPLPVYDKHHDAAHEIIETIRWVCEEIPDLKLAMEYDTKSFESMQRLCDKYNRAIDSIHQLW
KGTTQPMKLNTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQV
VLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEV
DHQLKERFANMKEGGRIVSSKPFAPLNFRINSRNLSDIGTIMRVVELSPLKGSVSKPVSYYLHTIDRTILENYFSSLKNP
KLREEQEAA

The query sequence (length=329) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3uwp:A 341 338 1.0000 0.9648 0.9734 0.0 7bwd:K, 5drt:A, 5drt:B, 5dry:A, 5dry:B, 5dsx:A, 5dsx:B, 5dt2:A, 5dt2:B, 5dtm:A, 5dtm:B, 5dtq:A, 5dtq:B, 5dtr:A, 5dtr:B, 4ek9:A, 4ekg:A, 4eki:A, 4eqz:A, 4er3:A, 4er5:A, 4er6:A, 4er7:A, 4hra:A, 6in3:A, 6j99:K, 6jm9:X, 6jma:X, 5juw:A, 5mvs:A, 5mvs:B, 5mw3:A, 5mw3:B, 5mw4:A, 5mw4:B, 6nj9:K, 6nj9:M, 6nqa:K, 1nw3:A, 6o96:K, 3qow:A, 3qox:A, 3sr4:A, 3sx0:A, 6te6:A, 6te6:B, 6tel:A, 6tel:B, 6ten:A, 6ten:B, 4wvl:A, 7xcr:K, 7xct:K, 7xct:M
2 4er0:A 315 330 0.9453 0.9873 0.9424 0.0
3 1u2z:C 385 292 0.2492 0.2130 0.2808 3.19e-24 7k6p:K, 7k6q:K, 1u2z:A, 1u2z:B
4 8fjm:A 251 137 0.1155 0.1514 0.2774 6.87e-08 8fjm:B, 8fjn:A
5 5fad:A 160 145 0.1125 0.2313 0.2552 7.05e-04 5fa8:A
6 5xj2:A 454 71 0.0699 0.0507 0.3239 0.25 5xj2:B, 5xj2:C, 5xj2:D, 5zq0:A, 5zq1:A, 5zq8:B, 5zq8:A, 5zth:A
7 1l3i:A 186 170 0.1216 0.2151 0.2353 0.48 1l3i:B, 1l3i:C, 1l3i:D, 1l3i:E, 1l3i:F
8 8ibt:A 694 271 0.1793 0.0850 0.2177 2.7 8ibs:A, 8ibs:B, 8ibs:C, 8ibs:D, 8ibs:E, 8ibs:F, 8ibt:B
9 3na1:A 472 76 0.0608 0.0424 0.2632 2.7 3n9y:A, 3n9y:B, 3n9z:A, 3n9z:B, 3na0:A, 3na0:B, 3na1:B
10 8pjd:A 347 75 0.0608 0.0576 0.2667 6.2 8bva:A, 8c1j:A, 5ful:A, 5fwa:A, 5fwd:A, 5jmq:A
11 4uzs:A 687 78 0.0517 0.0247 0.2179 6.9 4ucf:A, 4ucf:B, 4ucf:C, 4uzs:B
12 6ru4:A 276 45 0.0456 0.0543 0.3333 7.0 6r5s:A, 6r5s:B, 6ru4:B, 6ru4:C, 6ru4:D
13 2nwb:A 379 117 0.0790 0.0686 0.2222 7.7
14 6co7:A 1061 87 0.0669 0.0207 0.2529 9.0 6co7:B, 6co7:C, 6co7:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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