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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KKYNVCIVGGGSTYTPGFLKSFVRLQNEFPMEKLVLFDIDAERQQPIGEFGKILFSERFPELDFSYTTDPAEAYKDMDFI
FMQMRAGGLPMRREDEHISLHLGRIGQETCGAGGMAYGLRSCVDMIESIHQIRQYSPNAWILNYSNPAAIVAEALRREFP
DDNRILNICDQPENIMRSVSRLLNVSWEDLDPVYFGLNHYGWFTHVYDRKTGEDLLPEIKKIIKEKGFLPQDAEQRDQSW
LDTYGFVQTMMEDFPDFLPNTYDGYYLYPDYKFSHLNPDYTRADEVIDGREKRVFAECREVIARGELGDRFDSDAHAEMM
IKVAEAIAYNKNTRFIVIVKNEGAIANMQDDAMVELVCELGINGPRRMAVGNIPQFYLGLLVQQVSSEKLLVDAYYEHSY
QKALEAFTLNRLINDAKKAREILDAMIEVNKGMWPELK

The query sequence (length=438) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6vc6:B 440 440 1.0000 0.9955 0.9955 0.0 6vc6:A, 6vc6:C, 6vc6:D
2 6dvv:A 435 440 0.4612 0.4644 0.4591 2.89e-139 6dux:A, 6dux:B, 6dvv:B
3 1u8x:X 436 440 0.4475 0.4495 0.4455 2.18e-132
4 6wbt:A 442 445 0.4475 0.4434 0.4404 5.27e-123 6wbt:B, 6wbt:C, 6wbt:D
5 5c3m:B 411 445 0.3014 0.3212 0.2966 3.49e-53 5c3m:A, 5c3m:C, 5c3m:D
6 1up7:A 414 435 0.2717 0.2874 0.2736 1.59e-47 1up6:A, 1up6:C, 1up6:G, 1up7:B, 1up7:C, 1up7:D, 1up7:E, 1up7:F, 1up7:G, 1up7:H
7 3fef:A 434 451 0.2397 0.2419 0.2328 4.10e-17 3fef:B, 3fef:C, 3fef:D
8 1obb:A 478 405 0.2100 0.1925 0.2272 4.88e-07 1obb:B
9 1vjt:A 471 297 0.1598 0.1486 0.2357 1.15e-06 7br4:A, 7brf:A, 7ctl:A, 7ctm:A, 6kcx:A, 3u95:A, 3u95:B, 3u95:C, 3u95:D, 3u95:E, 3u95:F
10 4a7p:A 429 38 0.0388 0.0396 0.4474 0.11 4a7p:B
11 2wsi:A 285 75 0.0548 0.0842 0.3200 0.19
12 6ct6:B 331 96 0.0502 0.0665 0.2292 0.93 6ct6:A
13 5fzo:A 339 56 0.0411 0.0531 0.3214 1.5 5fzo:B, 2ypd:A, 2ypd:B
14 3nc6:B 389 88 0.0457 0.0514 0.2273 2.8 3nc3:A, 3nc3:B, 3nc5:A, 3nc5:B, 3nc6:A, 3nc7:A, 3nc7:B
15 2iii:A 120 50 0.0365 0.1333 0.3200 5.3
16 6euo:C 354 116 0.0639 0.0791 0.2414 6.0 6euo:A, 6euo:B, 6euo:D, 6eur:A, 6eur:C, 6eur:D, 6exf:A, 6exf:C, 6exf:D, 6exh:A, 6exh:B, 6exh:C, 6exh:D, 6f9p:A, 6f9p:C, 6f9p:D
17 2dwu:B 266 57 0.0365 0.0602 0.2807 6.1 2dwu:A, 2dwu:C
18 9b9m:B 329 87 0.0502 0.0669 0.2529 6.4 9b9m:A, 9b9m:C, 9b9m:D, 9b9n:A, 9b9n:B, 9b9o:A, 9b9o:B, 8w1q:A, 8w1q:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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