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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KKVSSFKLGMVLLLIAAVCGLILGGVNQVTAEPIAIQNKKTLDEANKAILPEASEFAEKTDIKGEGIVLGVTEGKSGSDL
KGYTIKVAPKGYAGAIEMMVGVSTEGKVTGIKILNHAETPGLGANATDPKFSGQYANKPAKELKVVKGAASGEDEIVAIT
GATITSKAVTLGVNEAIKFYDTKLKGG

The query sequence (length=187) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7zc6:G 187 187 1.0000 1.0000 1.0000 2.99e-130
2 8ahx:G 197 187 0.3102 0.2944 0.3102 9.38e-09 8rb8:G, 8rb9:G, 8rbm:G, 8rbq:G
3 4xa7:A 226 106 0.1925 0.1593 0.3396 4.69e-07
4 8a1y:C 253 154 0.2353 0.1739 0.2857 6.71e-06 8a1t:C, 8a1u:C, 8a1v:C, 8a1w:C, 8a1x:C, 8acw:C, 8acy:C, 8ad0:C, 8evu:C, 8ew3:C, 4u9s:C, 7xk3:C, 7xk4:C, 7xk5:C, 7xk6:C, 7xk7:C
5 4xhf:B 225 154 0.2353 0.1956 0.2857 2.46e-04 4xhf:A, 4xhf:C, 4xhf:D
6 8p2b:A 83 92 0.1497 0.3373 0.3043 7.15e-04 8p2b:B
7 3e2v:A 363 47 0.0909 0.0468 0.3617 0.54 3e2v:B
8 5ez3:B 541 48 0.0642 0.0222 0.2500 2.4 5ez3:A, 5ez3:C, 5ez3:D
9 8vsi:B 579 79 0.1337 0.0432 0.3165 3.2
10 7v9o:A 860 73 0.0963 0.0209 0.2466 5.9 7v9n:A, 7v9p:A, 7v9p:B, 7v9q:A
11 4zef:A 239 80 0.1016 0.0795 0.2375 9.1
12 3p3i:A 135 37 0.0535 0.0741 0.2703 9.7 3kuv:B, 3kuv:A, 3kuw:B, 3kuw:A, 3kv7:B, 3kv7:A, 3kv8:A, 3kv8:B, 3kvi:B, 3kvi:A, 3kvu:A, 3kvu:B, 3kvu:C, 3kvu:D, 3kvz:A, 3kvz:B, 3kvz:E, 3kvz:F, 3kw1:C, 3kw1:D, 3kw1:E, 3kw1:F, 3p2r:A, 3p2r:B, 3p3i:B, 3p3i:C, 3p3i:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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