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BioLiP
>protein
KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKYLRSVGDGETVEFDVVEGEKGAEAANVTGPG

The query sequence (length=73) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6a6j:A 90 77 0.9863 0.8000 0.9351 3.59e-45 6a6j:C, 6a6l:A, 6ktc:A, 6kug:A, 6lmr:A, 5yts:A, 5ytt:A, 5ytv:A, 5ytx:A
2 7f3i:A 93 78 0.9452 0.7419 0.8846 1.77e-43 7f3i:C, 7f3i:E, 7f3j:A, 7f3j:C, 7f3j:E, 7f3j:G, 7f3k:A, 7f3l:A
3 5udz:A 139 72 0.4384 0.2302 0.4444 1.00e-13 8ops:B, 8opt:B, 8ost:B, 3trz:A, 3trz:B, 3trz:C, 3trz:D, 3trz:E, 3trz:F, 3ts0:A, 3ts0:B, 3ts2:A, 3ts2:B, 5udz:B
4 2es2:A 67 62 0.3973 0.4328 0.4677 5.15e-13 3pf4:B, 3pf5:B, 3pf5:A
5 4a75:A 89 72 0.4384 0.3596 0.4444 5.36e-13 4a75:C, 4a75:E, 4a75:G, 4a76:A, 4a76:G, 4a76:C, 4a76:E, 4alp:A, 4alp:D
6 7ot5:B 66 64 0.3836 0.4242 0.4375 1.16e-11
7 1c9o:A 66 61 0.3973 0.4394 0.4754 1.29e-11 1c9o:B, 2hax:A, 2hax:B
8 7oii:B 39 32 0.2329 0.4359 0.5312 1.63e-06
9 7zhh:A 219 57 0.2055 0.0685 0.2632 1.6
10 4qqb:X 72 54 0.1781 0.1806 0.2407 2.9 4qqb:Y
11 7cfw:A 123 35 0.1918 0.1138 0.4000 3.0 7c1j:A
12 3ts5:E 146 47 0.1918 0.0959 0.2979 3.1 2os8:B, 2otg:B, 3pn7:B, 3pn7:E, 3ts5:B, 3tuy:B, 3tuy:E
13 8fqc:A 168 20 0.1233 0.0536 0.4500 8.5
14 1kij:A 384 34 0.1096 0.0208 0.2353 8.8 6enh:A, 1kij:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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