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BioLiP
>protein
KKTFREWQYFKLSITSFDQDVDDAHAIDQMTWRQWLNNALKRSYGIFGEGVEYSFLHVDDKLAYIRVNHADKDTFSSSIS
TYISTDELVGSPLTVSILQESSSLRLLEVTDDDRLWLKKVMEEEEQDCKCI

The query sequence (length=131) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6agb:H 131 131 1.0000 1.0000 1.0000 3.55e-95 6ah3:H
2 5gm4:A 219 81 0.1603 0.0959 0.2593 0.20 5gm4:B, 5gm4:C, 5gm4:D, 5gm4:E, 5gm4:F, 5gm4:G, 5gm5:A, 5gm5:D, 5gm5:F, 5gm5:G
3 6pop:A 475 25 0.1069 0.0295 0.5600 2.9 6pop:B, 6pop:C, 6pop:D, 6pop:E, 6pop:F
4 6wcd:A 314 99 0.1832 0.0764 0.2424 2.9
5 3fp0:A 511 28 0.0763 0.0196 0.3571 3.3
6 4r7x:A 150 102 0.1985 0.1733 0.2549 3.6 4r7x:B
7 1j0h:A 588 35 0.1069 0.0238 0.4000 4.0 1j0h:B, 1j0i:A, 1j0i:B, 1j0j:B, 1j0j:A, 1j0k:A, 1j0k:B
8 6h4h:A 458 44 0.0916 0.0262 0.2727 5.7 6h4h:B, 8p1p:A
9 7k7m:B 757 70 0.1679 0.0291 0.3143 6.5 7k7m:A, 7n6b:A
10 6aji:A 873 70 0.1679 0.0252 0.3143 6.6
11 6ajf:A 901 70 0.1679 0.0244 0.3143 6.6 6ajg:A, 6ajh:A, 6ajj:A, 7c2m:A, 7c2n:A, 6or2:A, 7wnx:A
12 4qro:A 332 29 0.0916 0.0361 0.4138 6.9 4qro:B, 4qro:C, 4qro:D, 4qro:E, 4qro:F, 4qro:G, 4qro:H
13 3c25:A 354 80 0.1679 0.0621 0.2750 8.1 3bvq:A, 3bvq:B, 3c25:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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