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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRS
VPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQ

The query sequence (length=112) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ms0:F 181 112 1.0000 0.6188 1.0000 4.30e-80 6c6u:N, 8e3f:F, 8e5k:F, 8e5o:F, 8e6x:F, 8e6z:F, 8g31:u, 8g34:u, 6gov:G, 7py0:G, 7py1:G, 7py5:G, 7py8:G, 6tqn:G, 6tqo:G, 6vu3:AB, 6vyq:AB, 6vyr:AB, 6vys:AB, 6vyt:AB, 6vyu:AB, 6vyw:AB, 6vyx:AB, 6vyy:AB, 6vyz:AB, 6vz2:AB, 6vz3:AB, 6vz5:AB, 6vz7:AB, 6x6t:AB, 6x7f:AB, 6x7k:AB, 6x9q:AB, 6xdq:AB, 6xdr:AB, 6xgf:AB, 6xii:AB, 6xij:AB, 6z9p:G, 6z9q:G, 6z9r:G, 6ztj:CF, 6ztl:CF, 6ztn:CF
2 6xav:L 95 112 0.8482 1.0000 0.8482 3.01e-62
3 8e74:Z 122 100 0.3929 0.3607 0.4400 2.86e-27 8e82:Z
4 8ehq:G 110 110 0.4018 0.4091 0.4091 7.93e-27 8ej3:G, 8eoe:G, 8eof:G, 8exy:G
5 8syi:G 120 96 0.3304 0.3083 0.3854 2.13e-22 8urw:G
6 8f5g:C 175 111 0.2679 0.1714 0.2703 6.36e-08 8f5g:A
7 8f5g:B 144 76 0.1964 0.1528 0.2895 9.03e-05
8 4yng:E 470 54 0.1607 0.0383 0.3333 0.17 8eq0:B, 8eq0:A, 4yng:A, 4yng:B, 4yng:C, 4yng:D, 4yng:F, 4yng:G, 4yng:H
9 5mmi:K 203 57 0.1607 0.0887 0.3158 0.20 6eri:AJ, 5h1s:L, 5mlc:L, 5mmm:K, 4v61:BL, 5x8p:K, 5x8t:K
10 8pv4:CW 550 54 0.1518 0.0309 0.3148 0.30 8pv6:CW, 8pv8:CW
11 5mdn:A 761 42 0.1339 0.0197 0.3571 0.87 5mdn:B
12 4zn3:A 147 30 0.1071 0.0816 0.4000 1.4
13 7oon:B 185 64 0.1429 0.0865 0.2500 3.3 7oon:A
14 4v8m:BT 199 63 0.1875 0.1055 0.3333 8.5 8ova:BT, 8ove:BT, 5t5h:T
15 7bvs:A 290 44 0.1339 0.0517 0.3409 9.2 7exb:A
16 5hr4:J 751 36 0.0893 0.0133 0.2778 9.4 5hr4:C
17 8tnq:C 35 23 0.0982 0.3143 0.4783 9.5 8tnp:C, 8tnr:C
18 7zpf:A 464 71 0.1518 0.0366 0.2394 9.7 7zpf:B, 7zpf:C, 7zpf:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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