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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KKRLVINLSNCRYDSVRRAAQQYGLREAGDNDDWTLYWTDYSVSLERVMEMKSYQKINHFPGMSEICRKDLLARNMSRML
KLFPKDFHFFPRTWCLPADWGDLQTYSRTRKNKTYICKPDSGCQGRGIFITRSVKEIKPGEDMICQLYISKPFIIDGFKF
DLRVYVLVTSCDPLRVFVYNEGLARFATTSYSHPNLDNLDEICMHLTNYSINKHSSNFVQDAFSGSKRKLSTFNSYMKTH
GYDVEQIWRGIEDVIIKTLISAHPVIKHNYHTCFPSHTLNSACFEILGFDILLDRKLKPWLLEVNHSPSFSTDSKLDKEV
KDSLLYDALVLINLGNCDKKKVLEEERQRGRFLQQCPNREIRLEEVKGFQAMRLQKTEEYEKKNCGGFRLIYPGLNLEKY
DKFF

The query sequence (length=404) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8u3z:N 447 404 1.0000 0.9038 1.0000 0.0 6vzq:A, 6vzq:B, 6vzq:C, 6vzq:D, 6vzr:B, 6vzr:A, 6vzr:C, 6vzr:D, 6vzs:A, 6vzs:B, 6vzs:C, 6vzs:D, 6vzt:A, 6vzt:B, 6vzu:A, 6vzu:D, 6vzu:B, 6vzu:C, 6vzv:D, 6vzv:A, 6vzv:B, 6vzv:C, 6vzw:A, 6vzw:B, 6vzw:C, 6vzw:D
2 4ylr:A 331 335 0.3317 0.4048 0.4000 3.27e-86 4yls:A
3 4i4t:F 357 273 0.1906 0.2157 0.2821 7.56e-23 8a0l:F, 7au5:F, 8b7a:F, 8b7c:F, 8bde:F, 5bmv:F, 8c0f:F, 5c8y:F, 5ca0:F, 5ca1:F, 5cb4:F, 7cda:F, 7ce6:F, 7ce8:F, 7cek:F, 7cld:F, 8cld:F, 8clg:F, 7cnm:F, 7cno:G, 7dad:F, 7dae:F, 7daf:F, 7db9:F, 7dbb:F, 7dbc:F, 7dbd:F, 7dp8:F, 7e4p:F, 7e4r:F, 7e4z:F, 6eg5:F, 7emj:F, 7en3:F, 7exc:F, 5ezy:F, 6fii:F, 6fjf:F, 6fjm:F, 6fkj:F, 6fkl:F, 5h74:F, 5h7o:F, 4i55:F, 6i5c:F, 4ihj:F, 5j2u:F, 7jfr:F, 5jh7:F, 8jjb:F, 8jjc:F, 5jvd:F, 6k9v:F, 6knz:F, 5kx5:F, 7l05:F, 5la6:F, 6lsm:F, 6lsn:F, 5lxs:F, 5lxt:F, 5m8d:F, 6n47:F, 5nfz:F, 5ng1:F, 5njh:F, 6nng:F, 4o4h:F, 4o4i:F, 5ov7:F, 8r67:F, 8riv:F, 8riw:F, 5s4l:F, 5s4m:F, 5s4n:F, 5s4o:F, 5s4p:F, 5s4q:F, 5s4r:F, 5s4s:F, 5s4t:F, 5s4u:F, 5s4v:F, 5s4w:F, 5s4x:F, 5s4y:F, 5s4z:F, 5s50:F, 5s51:F, 5s52:F, 5s53:F, 5s55:F, 5s56:F, 5s57:F, 5s58:F, 5s59:F, 5s5a:F, 5s5b:F, 5s5c:F, 5s5d:F, 5s5e:F, 5s5f:F, 5s5g:F, 5s5h:F, 5s5i:F, 5s5j:F, 5s5k:F, 5s5l:F, 5s5m:F, 5s5n:F, 5s5o:F, 5s5p:F, 5s5q:F, 5s5r:F, 5s5s:F, 5s5t:F, 5s5u:F, 5s5v:F, 5s5w:F, 5s5x:F, 5s5y:F, 5s5z:F, 5s60:F, 5s61:F, 5s62:F, 5s63:F, 5s64:F, 5s65:F, 5s66:F, 5s67:F, 5sb3:F, 5sb4:F, 5sb5:F, 5sb7:F, 5sb8:F, 5sba:F, 5sbb:F, 5sbc:F, 5sbd:F, 5sbe:F, 4tuy:F, 4tv8:F, 4tv9:F, 7vmk:F, 8wd0:F, 5xlt:F, 5xlz:F, 5xp3:F, 6y4m:F, 6y4n:F, 6y6d:F, 5yl2:F, 5ylj:F, 5yls:F, 5yz3:F, 7z2n:F, 7z2p:F, 7z7d:F, 8zb8:F, 4zhq:F, 4zi7:F, 4zol:F
4 8asn:G 346 276 0.1832 0.2139 0.2681 1.96e-19 8asn:H, 8asn:I, 5m7g:F
5 6br1:F 332 263 0.1757 0.2139 0.2700 3.39e-16 8ahm:F, 8b7b:F, 8bdf:F, 8bdg:F, 6brf:F, 6bry:F, 6bs2:F, 8clb:F, 8clc:F, 8clf:F, 8clh:F, 6d88:F, 8diq:F, 7e4q:F, 7e4y:F, 6gj4:F, 8huh:F, 6hx8:F, 5iyz:F, 5jcb:F, 5lyj:F, 7lz7:F, 5m7e:F, 5m8g:F, 5mf4:F, 4o2a:F, 4o2b:F, 6o5m:F, 6o61:F, 7ogn:F, 5osk:F, 6qqn:F, 6qtn:F, 6s9e:F, 5sb6:F, 6ses:F, 6x1c:F, 6x1e:F, 6x1f:F, 5xaf:F, 5xag:F, 5z4p:F
6 6agk:F 309 265 0.1683 0.2201 0.2566 3.69e-14 5fnv:F, 6gf3:F, 6jcj:F, 5jqg:F, 5xhc:F, 5xi5:F, 5xi7:F, 5yl4:F, 5z4u:F, 5zxh:F
7 8yua:F 310 264 0.1708 0.2226 0.2614 6.78e-13 4i50:F, 5lov:F, 8yu9:F
8 5s54:F 322 273 0.1634 0.2050 0.2418 1.65e-12 8a9t:F, 8a9z:F, 7cbz:F, 5sb9:F
9 5vlq:B 413 220 0.1337 0.1308 0.2455 1.80e-12
10 3tii:B 313 267 0.1510 0.1949 0.2285 3.39e-11 3tig:A, 3tii:A, 3tin:A
11 5vlq:A 391 219 0.1337 0.1381 0.2466 1.76e-10
12 8asn:F 317 273 0.1609 0.2050 0.2381 9.41e-10
13 8ytx:F 268 166 0.1163 0.1754 0.2831 2.29e-08 6gze:F, 4o4j:F, 5o7a:F, 7zyw:F
14 6f7c:F 281 259 0.1411 0.2028 0.2201 7.06e-07 7zx2:F
15 7lz8:F 256 175 0.1064 0.1680 0.2457 5.69e-05
16 6y3z:P 348 253 0.1510 0.1753 0.2411 8.45e-04
17 7mcb:H 380 41 0.0347 0.0368 0.3415 1.6 7mcl:H, 7mcn:H, 7mcp:A, 7mcp:H, 7mcq:A, 7mcq:H, 7mct:H, 7mcu:H, 7mcy:H, 7md0:H, 7md6:H, 7md8:H, 7mda:H, 7mdb:H
18 8ayh:B 951 87 0.0520 0.0221 0.2414 3.6 3frp:A, 3hrz:A, 3hs0:A, 3hs0:F
19 2xsz:E 315 79 0.0569 0.0730 0.2911 4.2 6fo1:D, 6fo1:E, 6fo1:F, 6k0r:D, 6k0r:E, 6k0r:F, 6k0r:J, 6k0r:K, 6k0r:L, 6qi8:D, 3uk6:A, 3uk6:D, 3uk6:E, 3uk6:F, 3uk6:H, 3uk6:I, 3uk6:J, 3uk6:K, 2xsz:D, 2xsz:F
20 9emc:F 337 79 0.0569 0.0682 0.2911 4.3 9ema:D, 9ema:E, 9ema:F, 9emc:D, 9emc:E, 6qi8:E, 6qi8:F, 6qi9:E, 6qi9:F, 3uk6:B, 3uk6:C, 3uk6:G
21 7zi4:D 439 79 0.0569 0.0524 0.2911 4.4 9c57:D, 9c57:F, 9c62:D, 9c62:F, 6hts:B, 6hts:D, 6hts:F, 5oaf:B, 7ole:B, 7ole:D, 7ole:F, 8x15:P, 8x15:R, 8x19:P, 8x19:R, 8x1c:N, 8x1c:P, 8x1c:R, 8xvg:D, 8xvg:F, 8xvt:D, 8xvt:F, 7zi4:B, 7zi4:F
22 5oaf:D 411 79 0.0569 0.0560 0.2911 4.5 9c62:B, 5oaf:F, 8x15:N, 8x19:N, 8xvg:B, 8xvt:B
23 9c57:B 389 79 0.0569 0.0591 0.2911 4.6 6h7x:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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