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BioLiP
>protein
KKRLTESQFQEAIQGLEVGQQTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAAFED

The query sequence (length=63) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8qa9:C 107 63 1.0000 0.5888 1.0000 1.81e-40 5clv:A, 5clv:B, 5clv:E, 5clv:F, 5clv:I, 5clv:J, 5clv:M, 5clv:N, 5cm3:A, 5cm3:B, 8qa9:D, 2w7n:A, 2w7n:B
2 7bcb:B 97 28 0.2381 0.1546 0.5357 0.003 7bca:A, 7bca:B, 7bcb:A
3 8p2f:1 61 24 0.1429 0.1475 0.3750 1.8 7asm:V, 7asn:V, 7aso:c, 7asp:V, 6ddd:J, 6ddg:J, 6fxc:AV, 6fxc:BV, 5hkv:U, 5hl7:U, 6hma:V, 5li0:0, 5nd8:0, 5nd9:0, 5ngm:AV, 7nhl:1, 7nhm:1, 8p2g:1, 8p2h:1, 7p48:V, 6s0x:V, 6s0z:V, 6s12:V, 6s13:V, 6sj6:0, 5t7v:LA, 5tcu:LA, 7ttu:J, 7ttw:J, 4wce:U, 4wfa:U, 4wfb:U, 6wqn:J, 6wqq:J, 6wrs:J, 6wru:J, 8y36:V, 8y37:V, 8y38:V, 8y39:V, 6yef:0
4 5i10:A 192 63 0.3333 0.1094 0.3333 2.7
5 7qd1:A 311 22 0.2063 0.0418 0.5909 3.8 7qcz:A, 7qd0:A, 7qd1:C, 7qd2:A, 7qd2:C
6 8qx5:A 158 26 0.2063 0.0823 0.5000 4.2 8qx5:B
7 6iub:A 264 29 0.1587 0.0379 0.3448 5.5 6iub:B, 6iuc:A, 6iuc:B, 6iuc:C, 6iuc:D, 6iud:B, 6iud:C, 6iud:D, 6iud:A, 8jmj:A, 8jmj:B, 8jmj:C, 8jmj:D, 8jmk:A, 8jmk:B, 8jmk:C, 8jmk:D, 8jml:A, 8jml:B
8 6bme:A 127 28 0.1587 0.0787 0.3571 5.7 6bme:B
9 5dw8:A 260 20 0.1429 0.0346 0.4500 5.9 5dw8:B, 5j16:A, 5j16:B, 5j16:C, 5j16:D
10 7p7q:Z 61 22 0.1270 0.1311 0.3636 5.9 7nhk:Z, 6o8w:Y, 6o8x:Y, 6o8y:Y, 6o8z:Y, 6o90:Y, 7p7r:Z, 7p7s:Z, 7p7t:Z, 7p7u:Z, 6w6p:Y, 6wu9:Y
11 8buu:X 61 24 0.1270 0.1311 0.3333 6.2 7aqc:X, 7aqd:X, 7as8:b, 7as9:b, 6ha1:X, 6ha8:X, 6htq:W, 3j9w:B0, 5njt:u, 7o5b:v, 7ope:b, 8qcq:X, 7qgu:Y, 7qh4:Y, 8qpp:v, 7qv1:u, 7qv2:u, 7qv3:u, 8r55:v, 8s1p:X, 8s1u:X, 6tnn:u, 6tpq:u
12 2y08:B 500 24 0.1587 0.0200 0.4167 7.8 2y08:A, 2y3r:A, 2y3r:B, 2y3r:C, 2y3r:D, 2y3s:A, 2y3s:B, 2y4g:A, 2y4g:B
13 1ho4:A 242 42 0.2698 0.0702 0.4048 7.8 1ho4:B, 1ho4:C, 1ho4:D, 1ixn:A, 1ixn:B, 1ixn:C, 1ixn:D, 1ixo:A, 1ixo:B, 1ixo:C, 1ixo:D, 1ixp:A, 1ixp:B, 1ixp:C, 1ixp:D, 1ixq:A, 1ixq:B, 1ixq:C, 1ixq:D, 1m5w:A, 1m5w:B, 1m5w:C, 1m5w:E, 1m5w:F, 1m5w:G
14 4iee:A 452 31 0.2063 0.0288 0.4194 8.9 5c12:A, 5c15:A, 5c2d:A, 5c2f:A, 4iei:A, 4ife:A
15 3szm:C 191 41 0.2063 0.0681 0.3171 9.9 3shv:A, 3shv:B, 3szm:A, 3szm:B, 3szm:D, 3szm:E, 3szm:F, 3szm:G, 3szm:H, 3t1n:A, 3t1n:B, 3u3z:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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