Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLQLTERQVKIWFQNRRMKNKKNS

The query sequence (length=58) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5zjr:A 64 58 1.0000 0.9062 1.0000 9.64e-36 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
2 1puf:A 77 56 0.7241 0.5455 0.7500 3.12e-24 2lp0:A
3 1ahd:P 68 56 0.6034 0.5147 0.6250 1.02e-19
4 4uus:A 67 54 0.5862 0.5075 0.6296 1.80e-19 4uus:E
5 2r5z:A 75 56 0.6034 0.4667 0.6250 2.14e-19 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
6 4cyc:A 66 54 0.5862 0.5152 0.6296 9.31e-19 1b8i:A
7 2h1k:B 60 56 0.6207 0.6000 0.6429 1.57e-18 2h1k:A
8 2ld5:A 67 56 0.5172 0.4478 0.5357 4.49e-15
9 1b72:A 68 54 0.5517 0.4706 0.5926 5.36e-15
10 5eea:G 63 56 0.5172 0.4762 0.5357 5.85e-15 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
11 6es3:K 72 56 0.5345 0.4306 0.5536 7.29e-15 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
12 8eml:A 58 56 0.5172 0.5172 0.5357 7.54e-15 8eml:B
13 1ig7:A 58 56 0.4828 0.4828 0.5000 7.07e-12
14 1jgg:A 57 54 0.4655 0.4737 0.5000 7.97e-12 1jgg:B
15 2me6:A 71 53 0.4655 0.3803 0.5094 1.93e-11
16 3a01:A 78 53 0.4310 0.3205 0.4717 1.28e-10 3a01:E
17 4rdu:D 62 56 0.4828 0.4516 0.5000 1.30e-10 4rdu:A, 4xrs:I, 4xrs:G
18 3rkq:A 58 57 0.5000 0.5000 0.5088 5.48e-10 3rkq:B
19 1nk2:P 77 56 0.4655 0.3506 0.4821 1.87e-09 1nk3:P
20 8pna:A 67 58 0.4483 0.3881 0.4483 3.79e-09 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
21 5flv:M 229 53 0.4483 0.1135 0.4906 1.24e-08 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
22 1zq3:P 68 58 0.3793 0.3235 0.3793 9.73e-08
23 3a01:F 61 54 0.4138 0.3934 0.4444 1.58e-07 3a01:B, 3lnq:A
24 4qtr:C 57 56 0.3966 0.4035 0.4107 2.64e-07 4qtr:A, 4qtr:B, 4qtr:D
25 6m3d:C 108 56 0.3793 0.2037 0.3929 2.21e-06 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
26 6m3d:C 108 48 0.3276 0.1759 0.3958 1.94e-05 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
27 1fjl:A 65 56 0.3793 0.3385 0.3929 2.29e-06 1fjl:B, 1fjl:C
28 8osb:E 62 56 0.3966 0.3710 0.4107 3.18e-06
29 4rbo:A 55 51 0.3793 0.4000 0.4314 1.14e-05 4rbo:D
30 3cmy:A 60 56 0.3621 0.3500 0.3750 6.01e-05
31 2lkx:A 68 56 0.3793 0.3235 0.3929 7.29e-05
32 6e8c:A 135 55 0.3448 0.1481 0.3636 1.27e-04 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
33 6e8c:A 135 48 0.2759 0.1185 0.3333 0.019 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
34 1lfu:P 82 61 0.3793 0.2683 0.3607 1.43e-04 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
35 8ejo:A 56 53 0.3276 0.3393 0.3585 1.63e-04 8ejo:B, 8ejp:A, 8ejp:B
36 7xrc:C 134 43 0.3276 0.1418 0.4419 5.83e-04 2xsd:C
37 4egc:A 539 38 0.2586 0.0278 0.3947 0.005
38 5hod:A 61 45 0.3103 0.2951 0.4000 0.010 5hod:D
39 1le8:A 53 42 0.2414 0.2642 0.3333 0.011 1akh:A, 1yrn:A
40 1gt0:C 137 59 0.3103 0.1314 0.3051 0.028 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
41 9b8u:B 66 49 0.2759 0.2424 0.3265 0.029 9b8u:A, 9b8u:C, 9b8u:D
42 3l1p:A 147 43 0.2931 0.1156 0.3953 0.050 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
43 8bx1:A 127 42 0.2931 0.1339 0.4048 0.055
44 8ik5:C 67 40 0.2586 0.2239 0.3750 0.11 8ike:C, 8ilw:C
45 6fqp:A 67 35 0.2414 0.2090 0.4000 0.23 6fqp:B, 6fqq:A, 6fqq:B, 6fqq:D, 6fqq:E
46 8g8e:X 140 44 0.2759 0.1143 0.3636 0.23 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
47 5wc9:A 136 56 0.3103 0.1324 0.3214 0.35 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
48 3d1n:I 150 57 0.3448 0.1333 0.3509 0.63 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
49 1akh:B 78 35 0.2241 0.1667 0.3714 1.2 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
50 1q8m:A 121 41 0.2241 0.1074 0.3171 1.5
51 1mnm:C 77 35 0.2241 0.1688 0.3714 1.9 1mnm:D
52 4qgu:B 191 27 0.1724 0.0524 0.3704 3.1 4qgu:A
53 4g9h:A 202 45 0.2414 0.0693 0.3111 5.1 4g9h:B, 4gci:A, 4gci:B
54 6cq2:A 688 39 0.1897 0.0160 0.2821 6.4 6cqi:A
55 3qvs:A 392 36 0.2241 0.0332 0.3611 7.6 3qvt:A, 3qvw:A, 3qvx:A, 3qw2:A, 3qw2:B, 3qw2:C, 3qw2:D, 1u1i:A, 1u1i:B, 1u1i:C, 1u1i:D
56 8czq:A 655 39 0.1897 0.0168 0.2821 8.8
57 7nhl:0 465 29 0.2069 0.0258 0.4138 9.6

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218