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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KKRIVKTINIDADKCNGCRACEVICSAFHAMPPYSSNNPARSRVRVVRDPLRDIYVPLYAGEYTESECIGRDKFIIDGKE
YDECGFCRASCPSRDLFREPDSGLPLKCDLCDGEPEPLCVKWCLVGALSVTEREVETEMEIGLESLISRFGADVVADTVE
Q

The query sequence (length=161) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4z3w:F 170 168 0.9938 0.9412 0.9524 2.75e-113 4z3w:E, 4z3w:G, 4z3w:H, 4z3x:E, 4z3x:F, 4z3x:G, 4z3x:H, 4z3y:E, 4z3y:F, 4z3y:G, 4z3y:H, 4z3z:E, 4z3z:F, 4z3z:G, 4z3z:H, 4z40:E, 4z40:F, 4z40:G, 4z40:H
2 8c0z:C 158 138 0.2609 0.2658 0.3043 8.76e-11 8c0z:F
3 6x6u:B 167 128 0.2360 0.2275 0.2969 6.60e-06 6x1o:B, 6x1o:D, 6x6u:D
4 7qv7:B 183 165 0.2857 0.2514 0.2788 6.48e-04 7qv7:C, 7qv7:J, 7qv7:N, 7qv7:P, 7qv7:X
5 2vpw:F 193 132 0.2236 0.1865 0.2727 0.16 2vpw:B, 2vpx:F, 2vpx:B, 2vpy:F, 2vpy:B, 2vpz:F, 2vpz:B
6 6f0k:B 961 34 0.0807 0.0135 0.3824 0.22
7 3ijh:B 221 47 0.1180 0.0860 0.4043 0.22 3ijh:D, 3ijs:B, 3ijs:D, 3ijy:B, 3ijy:D, 3ikc:B, 3ikc:D
8 1kqf:B 289 167 0.2422 0.1349 0.2335 0.23 1kqg:B
9 3hns:H 220 47 0.1180 0.0864 0.4043 0.23 3hnt:H, 3hnv:H
10 6btm:B 948 36 0.0807 0.0137 0.3611 0.27
11 1clz:H 218 47 0.1180 0.0872 0.4043 0.31
12 1h0h:B 214 33 0.0683 0.0514 0.3333 0.31 1h0h:L
13 8bqg:B 214 60 0.0932 0.0701 0.2500 0.35 8bqh:B, 8bqi:B, 8bqj:B, 8bqk:B, 8bql:B, 8cm4:B, 8cm4:D, 8cm5:B, 8cm5:D, 8cm5:L, 8cm5:S, 8cm6:B, 8cm6:D, 8cm7:B, 8rc8:B, 8rc9:B, 8rca:B, 8rcb:B, 8rcc:B, 8rcg:B, 6sdr:B, 6sdv:B, 7z5o:BBB
14 5xxu:T 151 82 0.1491 0.1589 0.2927 0.36
15 1m7d:B 220 47 0.1180 0.0864 0.4043 0.38 1m7i:B, 1pz5:B
16 1uz8:B 212 47 0.1180 0.0896 0.4043 0.43 1uz8:H
17 2vq1:B 213 47 0.1180 0.0892 0.4043 0.49 2vq1:F
18 1h98:A 77 37 0.0932 0.1948 0.4054 0.84
19 7p8n:B 613 85 0.1429 0.0375 0.2706 1.8 7p5h:B, 7p5h:E, 7p5h:b, 7p5h:e, 7p8n:b, 7p91:b, 7p91:B, 7p92:B
20 6lod:B 929 25 0.0621 0.0108 0.4000 2.1 6loe:B
21 5h1y:B 245 47 0.1056 0.0694 0.3617 3.6 5h1y:A
22 1bc6:A 77 30 0.0683 0.1429 0.3667 3.9 1bd6:A, 1bqx:A, 1bwe:A
23 2xwp:A 257 19 0.0683 0.0428 0.5789 4.0
24 8k9e:B 951 37 0.0870 0.0147 0.3784 4.2 8k9f:B, 8x2j:B
25 7qv7:D 448 18 0.0621 0.0223 0.5556 6.7 7qv7:K, 7qv7:Q, 7qv7:R, 7qv7:V, 7qv7:Z
26 7qv7:A 174 152 0.1988 0.1839 0.2105 8.1 7qv7:G
27 4dhv:B 66 42 0.0745 0.1818 0.2857 8.7 4dhv:A, 3pni:A, 3pni:B, 1siz:A, 1siz:C, 1sj1:A, 1sj1:B, 2z8q:A, 2z8q:B
28 6qx6:A 264 43 0.0870 0.0530 0.3256 8.8 6qx6:B
29 6sei:A 276 34 0.0932 0.0543 0.4412 9.1 6sei:C
30 6h8k:I 137 89 0.1242 0.1460 0.2247 9.6
31 5c6o:A 446 31 0.0683 0.0247 0.3548 9.7
32 7bkb:K 386 127 0.1863 0.0777 0.2362 9.7 7bkb:k, 7bkc:M, 7bkc:m

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218