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BioLiP
>protein
KKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKVL

The query sequence (length=58) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5eea:G 63 58 1.0000 0.9206 1.0000 2.40e-36 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
2 2ld5:A 67 58 0.8276 0.7164 0.8276 7.26e-31
3 1puf:A 77 57 0.5000 0.3766 0.5088 9.45e-17 2lp0:A
4 5zjr:A 64 56 0.5172 0.4688 0.5357 8.42e-15 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
5 8eml:A 58 54 0.4483 0.4483 0.4815 7.06e-14 8eml:B
6 2r5z:A 75 56 0.4828 0.3733 0.5000 1.05e-13 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
7 2h1k:B 60 54 0.4483 0.4333 0.4815 1.41e-13 2h1k:A
8 4uus:A 67 54 0.4655 0.4030 0.5000 5.40e-13 4uus:E
9 1ahd:P 68 54 0.4828 0.4118 0.5185 6.59e-13
10 6es3:K 72 57 0.4483 0.3611 0.4561 9.75e-13 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
11 4cyc:A 66 54 0.4483 0.3939 0.4815 1.76e-12 1b8i:A
12 1b72:A 68 54 0.4310 0.3676 0.4630 2.04e-12
13 2me6:A 71 57 0.4138 0.3380 0.4211 3.89e-11
14 1ig7:A 58 57 0.3966 0.3966 0.4035 4.13e-11
15 3rkq:A 58 55 0.3448 0.3448 0.3636 3.73e-09 3rkq:B
16 8pna:A 67 56 0.3621 0.3134 0.3750 5.38e-09 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
17 1jgg:A 57 54 0.3276 0.3333 0.3519 6.17e-09 1jgg:B
18 4rdu:D 62 58 0.3621 0.3387 0.3621 1.08e-08 4rdu:A, 4xrs:I, 4xrs:G
19 6m3d:C 108 54 0.3793 0.2037 0.4074 3.07e-08 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
20 6m3d:C 108 48 0.3276 0.1759 0.3958 1.58e-07 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
21 1nk2:P 77 57 0.3276 0.2468 0.3333 9.00e-08 1nk3:P
22 5flv:M 229 51 0.3103 0.0786 0.3529 1.84e-07 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
23 2lkx:A 68 56 0.3276 0.2794 0.3393 3.98e-07
24 4qtr:C 57 54 0.3621 0.3684 0.3889 5.31e-07 4qtr:A, 4qtr:B, 4qtr:D
25 1fjl:A 65 56 0.3448 0.3077 0.3571 1.14e-06 1fjl:B, 1fjl:C
26 1zq3:P 68 55 0.2931 0.2500 0.3091 2.33e-06
27 8osb:E 62 56 0.3103 0.2903 0.3214 1.09e-05
28 3a01:F 61 54 0.3103 0.2951 0.3333 1.62e-05 3a01:B, 3lnq:A
29 5hod:A 61 48 0.3103 0.2951 0.3750 2.13e-05 5hod:D
30 3a01:A 78 53 0.2759 0.2051 0.3019 2.96e-05 3a01:E
31 4egc:A 539 49 0.3103 0.0334 0.3673 5.28e-05
32 4rbo:A 55 51 0.2759 0.2909 0.3137 1.82e-04 4rbo:D
33 8ejo:A 56 54 0.2586 0.2679 0.2778 6.81e-04 8ejo:B, 8ejp:A, 8ejp:B
34 3cmy:A 60 56 0.2759 0.2667 0.2857 0.001
35 6e8c:A 135 55 0.3103 0.1333 0.3273 0.002 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
36 6e8c:A 135 49 0.2069 0.0889 0.2449 0.34 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
37 9b8u:B 66 49 0.2241 0.1970 0.2653 0.003 9b8u:A, 9b8u:C, 9b8u:D
38 8ik5:C 67 29 0.2414 0.2090 0.4828 0.003 8ike:C, 8ilw:C
39 1akh:B 78 55 0.3276 0.2436 0.3455 0.10 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
40 1gt0:C 137 43 0.2414 0.1022 0.3256 0.25 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
41 1mnm:C 77 53 0.3276 0.2468 0.3585 0.26 1mnm:D
42 1lfu:P 82 46 0.1724 0.1220 0.2174 0.28 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
43 6fqp:A 67 41 0.2241 0.1940 0.3171 0.54 6fqp:B, 6fqq:A, 6fqq:B, 6fqq:D, 6fqq:E
44 1zu1:A 127 48 0.2586 0.1181 0.3125 0.83
45 5wc9:A 136 57 0.2586 0.1103 0.2632 1.7 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
46 8ftt:A 128 48 0.2241 0.1016 0.2708 2.8 8ftt:B
47 7vfs:A 1266 43 0.2069 0.0095 0.2791 4.2 7vfu:A, 7vfv:A, 7vfw:A
48 5u2i:B 151 22 0.1379 0.0530 0.3636 7.3 5u2i:D
49 5ms0:C 1291 51 0.2586 0.0116 0.2941 8.5
50 3iyd:C 1089 35 0.2241 0.0119 0.3714 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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