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BioLiP
>protein
KKLSEMVEEELEQMIRRREFGEGEQLPSERELMAFFNVGRPSVREALAALKRKGLVQINNGERARVSRPSADTIIGELSG
MAKDFLSHPGGIAHFEQLRLFFESSLVRYAAEHATDEQIDLLAKALEINSQSLDNNAAFIRSDVDFHRVLAEIPGNPIFM
AIHVALLDWLIAARPTVTDQALHEHNNVSYQQHIAIVDAIRRHDPDEADRALQSHLN

The query sequence (length=217) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6wfq:C 228 217 1.0000 0.9518 1.0000 1.37e-159 6on4:A, 6on4:B, 6wfq:D, 6wg7:C, 6wg7:D, 6wg7:E, 6wg7:G, 6wg7:F, 6wg7:H
2 1h9t:A 232 158 0.2212 0.2069 0.3038 1.81e-10 1h9g:A, 1h9t:B, 1hw2:A, 1hw2:B
3 2di3:A 231 233 0.2949 0.2771 0.2747 2.48e-07 2di3:B
4 7c7e:A 142 127 0.1475 0.2254 0.2520 3.18e-05
5 4u0v:A 243 81 0.1198 0.1070 0.3210 3.41e-05 4u0v:B, 4u0w:A, 4u0w:B, 4u0y:A, 4u0y:B, 4u0y:C, 4u0y:D, 4wwc:B
6 4wwc:A 213 63 0.1060 0.1080 0.3651 5.21e-04
7 4p9u:E 272 68 0.1014 0.0809 0.3235 0.001 4p9u:F, 4p9u:A, 4p9u:B, 4pdk:A, 4pdk:B
8 5dv5:A 267 61 0.0968 0.0787 0.3443 0.001 5dv5:B
9 5d4s:B 83 50 0.0783 0.2048 0.3400 0.002 5d4r:A, 5d4r:B, 5d4s:A, 4egy:A, 4egy:B, 4egz:A, 4egz:B, 4h0e:A, 4h0e:B
10 7u5q:A 217 222 0.2765 0.2765 0.2703 0.003 7u5q:B
11 7xp0:A 200 224 0.2627 0.2850 0.2545 0.003 7xp1:A
12 2fbh:A 137 61 0.0876 0.1387 0.3115 1.2
13 4axs:A 291 52 0.0691 0.0515 0.2885 3.0
14 5xla:A 490 64 0.1014 0.0449 0.3438 4.0 3eyk:B, 5xl3:B, 5xl3:A, 5xl4:A, 5xl4:B, 5xl6:A, 5xl7:A, 5xl7:B, 5xl9:A, 5xla:B, 5xlc:A, 5xlc:B, 5xld:A, 5xld:B
15 3x3m:A 397 35 0.0737 0.0403 0.4571 4.1 5ebc:A, 3x3n:A
16 3gb5:A 185 32 0.0645 0.0757 0.4375 4.7 3to0:A, 3to0:B
17 3tnz:A 222 32 0.0645 0.0631 0.4375 5.6 3gfd:A, 3gfd:B, 3gh8:A, 3gh8:B, 3gh8:C, 3gh8:D, 3gh8:E, 3gh8:F, 3gh8:G, 3gh8:H, 3tnz:B
18 8xgm:A 306 90 0.0968 0.0686 0.2333 5.6 8jjp:A
19 8r7y:C 312 96 0.1336 0.0929 0.3021 6.5 7bhy:A, 7bhy:B, 7bhy:C, 4oqp:A, 8r7y:D, 8r7y:A, 8r7y:B
20 5b4x:B 479 21 0.0553 0.0251 0.5714 8.5 3a7q:B, 5b4x:D, 5b4y:B
21 6fbx:A 148 44 0.0737 0.1081 0.3636 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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