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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KKLFLKALKEKFEEDPKEKYTKFYTFGGWQQSARKREFVEANEKIVAEKRGGIPMYNPDIGVPLGQRKLMPYKLSGTDYI
VEGDDLHFMNNAAIQQMWDDIRRTVIVGMDTGHAVLEKRLGVEVTPETINEYMATINHSLPGGAVVQEHMVEVHPSLAWD
CYAKIFTGDDELADELDKKYLIDINKLFPEEQAEQLKAAIGKKTYQVSRVPTLVGRVCDGGTIARWSAMQIGMSFITAYK
LCAGEAAIADFSYAAKHADVVGVGTALPARRSRGANEPGGIPFGVLCDIVQTTRISDDPVEQSLEVVAVGAMLYDQVWLG
SYMSGGVGFTQYATAAYTDDILDDFAYYGYEYVEKKYGINSTKPTMDVVEDIATEVTLYSLEQYDEFPTLLEDHFGGSQR
AAVAAAASGISVCMATGNSNAGVNGWYLSQIMHKEYHSRLGFYGYDLQDQCGASNSLSIRNDEASPLELRGPNYPNYAMN
VGHQGEYAGITQAAHSARKDAFAMNPLIKIAFADPSLVFDFARPRKECARGALREFEAAGERDVILPAK

The query sequence (length=549) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5n1q:A 549 549 1.0000 1.0000 1.0000 0.0 5n1q:D, 5n28:A, 5n28:D, 5n2a:A
2 5a8w:D 549 535 0.7687 0.7687 0.7888 0.0 5a8r:A, 5a8r:D, 5a8r:G, 5a8r:J, 5a8w:A, 5a8w:G, 5a8w:J
3 1e6v:A 545 547 0.7341 0.7394 0.7367 0.0 1e6v:D
4 5a0y:A 548 548 0.6958 0.6971 0.6971 0.0 5a0y:D, 5a8k:A, 5a8k:D, 7b2h:A, 7b2h:D, 5g0r:A, 5g0r:D, 1hbm:A, 1hbm:D, 1hbn:A, 1hbn:D, 1hbo:A, 1hbo:D, 1hbu:A, 1hbu:D, 3m1v:A, 3m1v:D, 3m2r:A, 3m2r:D, 3m2u:A, 3m2u:D, 3m2v:A, 3m2v:D, 3m30:A, 3m30:D, 3m32:A, 3m32:D, 1mro:A, 1mro:D, 3pot:A, 3pot:D, 7suc:A, 7suc:a, 7sxm:A, 7sxm:D
5 1e6y:A 568 543 0.6248 0.6039 0.6317 0.0 1e6y:D, 8gf5:A, 8gf5:B
6 7nkg:D 565 566 0.6594 0.6407 0.6396 0.0 7nkg:A, 7nkg:G, 7nkg:J
7 3sqg:A 578 558 0.5301 0.5035 0.5215 0.0 3sqg:D, 3sqg:G
8 7b1s:D 593 590 0.4645 0.4300 0.4322 1.44e-163 7b1s:A, 7b2c:A, 7b2c:D
9 2q3r:A 351 94 0.0437 0.0684 0.2553 0.38 1vji:A
10 5nbs:A 842 45 0.0310 0.0202 0.3778 2.1 5nbs:B
11 2c43:A 280 29 0.0200 0.0393 0.3793 2.2 2cg5:A
12 5szl:C 418 128 0.0546 0.0718 0.2344 4.1 5szl:A, 5szl:B, 5szl:D, 4zi9:A, 4zi9:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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