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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KKLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLF
PCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEV
HDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQM
VDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEE
LANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFARIV

The query sequence (length=392) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1cl1:B 392 392 1.0000 1.0000 1.0000 0.0 1cl1:A, 1cl2:A, 1cl2:B, 2fq6:A, 2fq6:B, 2gqn:A, 2gqn:B, 4itx:A, 4itx:B
2 8sad:A 398 392 0.8852 0.8719 0.8852 0.0 8sa7:A, 8sa7:B, 8sa8:A, 8sa8:D, 8sa8:B, 8sa8:C, 8sa9:A, 8sa9:B, 8saa:A, 8saa:B, 8sab:A, 8sab:B, 8sac:A, 8sac:D, 8sac:B, 8sac:C, 8sad:B, 8sae:A, 8sae:B, 8u98:A, 8u98:D, 8u98:B, 8u98:C, 8u99:A, 8u99:B
3 1e5e:A 394 381 0.2985 0.2970 0.3071 2.87e-61 1e5e:B, 1e5f:A, 1e5f:B
4 4l0o:H 373 399 0.3189 0.3351 0.3133 2.43e-58 4l0o:A, 4l0o:C, 4l0o:E, 4l0o:G, 4l0o:M, 4l0o:O
5 8j6n:A 390 340 0.2832 0.2846 0.3265 6.83e-54 8j6n:D, 8j6n:B, 8j6n:C, 8j6n:E, 8j6n:H, 8j6n:J, 8j6n:K, 8j6n:F, 8j6n:G, 8j6n:I, 8j6n:L
6 3aej:A 387 373 0.2934 0.2972 0.3083 6.92e-54 3aej:D, 3aej:B, 3aej:C, 3ael:A, 3ael:D, 3ael:B, 3ael:C, 3aem:A, 3aem:D, 3aem:B, 3aem:C, 3aen:A, 3aen:D, 3aen:B, 3aen:C, 3aeo:A, 3aeo:D, 3aeo:B, 3aeo:C, 3aep:A, 3aep:D, 3aep:B, 3aep:C
7 7d7o:B 377 392 0.3036 0.3156 0.3036 9.49e-54 7d7o:A
8 6egr:A 396 387 0.2832 0.2803 0.2868 7.10e-52 5d5s:A, 5e4z:A, 4hf8:A, 3jw9:A, 3jwa:A, 3jwb:A, 5k30:A, 5m3z:A, 3mkj:A, 4oma:A, 6s0c:A
9 5dx5:A 399 395 0.2934 0.2882 0.2911 1.48e-51 5dx5:B
10 6ldo:A 381 399 0.2832 0.2913 0.2782 1.47e-49 6ldo:B, 6ldo:C, 6ldo:D, 6ldo:E, 6ldo:F, 6le4:A, 6le4:B, 6le4:C, 6le4:D, 6le4:E, 6le4:F
11 8jui:A 380 394 0.2908 0.3000 0.2893 1.31e-47
12 7ba4:A 377 342 0.2806 0.2918 0.3216 2.13e-47 7ba4:B, 7ba4:C, 7ba4:D
13 3cog:D 392 326 0.2628 0.2628 0.3160 1.17e-46 3cog:A, 3cog:B, 3cog:C, 5eig:C, 5eig:D, 5eig:E, 5eig:F, 5eig:G, 6nba:A, 6nba:B, 6nba:C, 6nba:D, 2nmp:A, 2nmp:B, 2nmp:C, 2nmp:D, 5tsu:A, 5tsu:C, 5tsu:D, 5tsu:E, 5tsu:F, 5tsu:G, 5tsu:H
14 6ld8:A 388 389 0.3112 0.3144 0.3136 1.75e-46 6ld8:D, 6ld8:B, 6ld8:C, 6ld9:A, 6ld9:B, 6ld9:C, 6ld9:D, 6lgo:A, 6lgo:B, 6lgo:C, 6lgo:D
15 7mcb:H 380 385 0.2679 0.2763 0.2727 2.61e-46 7mcl:H, 7mcn:H, 7mcp:A, 7mcp:H, 7mcq:A, 7mcq:H, 7mct:H, 7mcu:H, 7mcy:H, 7md0:H, 7md6:H, 7md8:H, 7mda:H, 7mdb:H
16 1qgn:A 398 371 0.2730 0.2688 0.2884 2.12e-45 1i41:A, 1i41:C, 1i41:B, 1i41:D, 1i41:E, 1i41:G, 1i41:F, 1i41:H, 1i41:I, 1i41:K, 1i41:J, 1i41:L, 1i43:A, 1i43:C, 1i43:B, 1i43:D, 1i43:E, 1i43:G, 1i43:F, 1i43:H, 1i43:I, 1i43:K, 1i43:J, 1i43:L, 1i48:A, 1i48:C, 1i48:B, 1i48:D, 1i48:E, 1i48:G, 1i48:F, 1i48:H, 1i48:I, 1i48:K, 1i48:J, 1i48:L, 1qgn:C, 1qgn:B, 1qgn:D, 1qgn:E, 1qgn:G, 1qgn:F, 1qgn:H
17 4iyo:D 384 391 0.2908 0.2969 0.2916 4.94e-45 4ixs:B, 4ixz:A, 4iy7:A, 4iy7:B, 4iy7:C, 4iy7:D, 4iyo:A, 4iyo:B, 4iyo:C
18 1cs1:D 384 339 0.2781 0.2839 0.3215 5.78e-44
19 1n8p:A 393 351 0.2755 0.2748 0.3077 2.75e-42 1n8p:B, 1n8p:C, 1n8p:D
20 1pg8:A 398 386 0.2653 0.2613 0.2694 3.83e-42 7f1u:A, 7f1u:B, 7f1u:C, 7f1u:D, 7f1v:A, 7f1v:B, 7f1v:C, 7f1v:D, 1pg8:C, 1pg8:B, 1pg8:D, 3vk3:A, 3vk3:B, 3vk3:C, 3vk3:D, 5x2w:A, 5x2w:B, 5x2w:C, 5x2w:D, 5x2x:A, 5x2x:B, 5x2x:C, 5x2x:D, 5x2z:A, 5x2z:B, 5x2z:C, 5x2z:D, 5x30:A, 5x30:B, 5x30:C, 5x30:D
21 3qhx:A 377 392 0.3036 0.3156 0.3036 3.92e-42 3qhx:B
22 5x5h:A 385 389 0.2730 0.2779 0.2751 5.25e-42
23 1ibj:A 380 349 0.2423 0.2500 0.2722 6.45e-41 1ibj:C
24 6k1l:A 382 390 0.2883 0.2958 0.2897 9.95e-41 6k1l:B, 6k1l:C, 6k1l:D, 6k1m:A, 6k1m:B, 6k1m:C, 6k1m:D, 6k1n:A, 6k1n:B, 6k1n:C, 6k1n:D
25 7nl1:D 400 396 0.2755 0.2700 0.2727 4.15e-40 8bis:C, 8bis:A, 8biu:G, 8biu:A, 8biv:A, 8biv:E, 8biw:E, 8biw:A, 8bix:C, 8bix:A, 8biz:E, 8biz:A, 7nl1:A, 7nl1:B, 7nl1:C, 7nl1:E, 7nl1:F, 7nl1:G, 7nl1:H
26 6cja:A 381 393 0.2755 0.2835 0.2748 1.16e-37 6cja:B, 6cja:C, 6cja:D
27 5ijg:B 403 405 0.2883 0.2804 0.2790 4.58e-36 5ijg:A
28 8wko:A 425 427 0.2985 0.2753 0.2740 2.02e-32 8wko:B, 8wkr:A, 8wkr:B, 8wkr:C, 8wkr:D
29 7kb1:A 428 427 0.2934 0.2687 0.2693 6.20e-31 7kb1:B, 7kb1:C, 7kb1:D
30 2ctz:A 421 430 0.2755 0.2565 0.2512 3.09e-24 2ctz:B
31 2cb1:A 404 389 0.2449 0.2376 0.2468 1.16e-21
32 8ovh:A 400 355 0.2245 0.2200 0.2479 3.27e-20 8ovh:B, 8ovh:C, 8ovh:D
33 7yeo:B 382 261 0.1990 0.2042 0.2989 3.73e-18 7yeo:A
34 8erb:K 429 371 0.2041 0.1865 0.2156 2.14e-10 8erb:A, 8erb:C, 8erb:B, 8erb:D, 8erb:G, 8erb:H, 8erb:F, 8erb:P, 8erb:I, 8erb:J, 8erb:M, 8erb:E, 8erb:Q, 8erb:N, 8erb:L, 8erj:A, 8erj:B, 8erj:C, 8erj:D, 8erj:E, 8erj:F, 8erj:H, 8erj:G
35 8d5h:B 274 86 0.0791 0.1131 0.3605 0.21 8d5g:A, 8d5g:B, 8d5h:A, 8d5i:A, 8d5i:B
36 6gsj:C5 52 46 0.0434 0.3269 0.3696 0.34 6gsk:C5
37 2z06:A 252 92 0.0714 0.1111 0.3043 1.3 2z06:B, 2z06:C, 2z06:D
38 4wv3:B 518 59 0.0587 0.0444 0.3898 1.3 4wv3:A
39 4eyg:B 364 63 0.0459 0.0495 0.2857 1.5 4eyg:A
40 5dll:A 854 277 0.1709 0.0785 0.2419 1.8
41 8oix:H 204 39 0.0357 0.0686 0.3590 4.3 8oix:V
42 8qog:B 500 62 0.0408 0.0320 0.2581 5.8 8iaj:A, 8iaj:E, 8iak:A, 8iak:E, 8qof:F, 8qof:B
43 1n31:A 386 141 0.0893 0.0907 0.2482 6.0 1elq:A, 1elq:B, 1elu:A, 1elu:B, 1n2t:A, 1n2t:B, 1n31:B
44 6gym:3 138 26 0.0306 0.0870 0.4615 6.5 8cen:3, 8ceo:3, 7ml0:3, 7ml1:3, 7ml2:3, 7ml3:3, 7o4i:3, 7o4j:3, 7o4k:3, 7o4l:3, 7o72:3, 7o73:3, 7o75:3, 5oqj:3, 5oqm:3, 7zs9:3, 7zsa:3, 7zsb:3
45 6v3f:A 1234 53 0.0408 0.0130 0.3019 7.2 6v3h:A
46 6fek:A 296 75 0.0510 0.0676 0.2667 7.7 5amn:A, 4cki:A, 4ckj:A, 7du8:A, 7du8:B, 7du9:A, 7dua:A, 5fm2:A, 5fm3:A, 6i82:A, 6i82:B, 6i83:A, 2ivs:A, 2ivs:B, 2ivt:A, 2ivu:A, 2ivv:A, 7ju5:A, 7ju5:B, 7ju6:A, 7ju6:B, 6ne7:A, 6nec:A, 6nec:C, 6nja:A, 7nzn:A, 7run:A, 7run:B, 6vhg:A, 2x2k:A, 2x2l:A, 2x2m:A, 2x2m:B
47 8ee6:A 1808 30 0.0255 0.0055 0.3333 8.5 8edw:A
48 8eop:A 1687 30 0.0255 0.0059 0.3333 8.7
49 3mpi:C 395 71 0.0561 0.0557 0.3099 9.1 3mpi:A, 3mpi:B, 3mpi:D, 3mpj:B, 3mpj:A, 3mpj:D, 3mpj:E, 3mpj:F, 3mpj:G
50 7dua:B 274 69 0.0485 0.0693 0.2754 9.2 7du9:B
51 6dru:A 718 34 0.0434 0.0237 0.5000 9.6 6dru:B
52 8h61:B 340 111 0.0638 0.0735 0.2252 9.6 7xwu:A, 7xwu:B, 7y0k:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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