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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KKKRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMVIDLEKQIEKR
DKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV

The query sequence (length=130) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 9fmd:M 224 130 1.0000 0.5804 1.0000 3.89e-95 8c6j:y, 8i0u:M, 8i0v:M, 8i0w:M, 6icz:M, 6id0:M, 6id1:M, 5mqf:N, 6qdv:y, 8ro2:M, 7w59:M, 7w5a:M, 7w5b:M, 5xjc:M, 5yzg:M
2 8ro0:M 196 120 0.4154 0.2755 0.4500 7.09e-26 8ro1:M
3 8sl7:D 544 37 0.1000 0.0239 0.3514 3.1 8sl7:A, 8sl7:B, 8sl7:C
4 1zfj:A 476 69 0.1385 0.0378 0.2609 3.7
5 5kwk:B 457 35 0.0846 0.0241 0.3143 3.7 5koe:A, 5kor:B, 5kor:C, 5kor:A, 5kor:D, 5kwk:A, 5kx6:A, 5kx6:B
6 4gir:B 411 62 0.1308 0.0414 0.2742 4.0 4ggh:A, 4ggh:B, 4ggh:C, 4ggh:D, 4gir:A, 4gir:C, 4gir:D, 4gis:A, 4gis:B
7 3c6k:D 348 62 0.1462 0.0546 0.3065 5.3 3c6k:A, 3c6k:B, 3c6k:C, 3c6m:A, 3c6m:B, 3c6m:C, 3c6m:D
8 1l4a:B 82 48 0.1154 0.1829 0.3125 5.4
9 3hd7:B 98 54 0.1231 0.1633 0.2963 5.8 3rk2:B, 5w5c:B
10 6pxs:A 370 46 0.1000 0.0351 0.2826 6.1 6pxs:B, 6pxs:C, 6pxs:D
11 6mvf:A 643 46 0.1154 0.0233 0.3261 7.7 6mvf:B, 6mvf:C, 6mvf:D, 6mvf:E, 6mvf:F
12 3jb9:Y 261 128 0.2692 0.1341 0.2734 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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