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BioLiP
>protein
KKKRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMVIDLEKQIEKR
DKYSRRRPYNDDADIDYINERNAKFNKKAERFYG

The query sequence (length=114) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 9fmd:M 224 114 1.0000 0.5089 1.0000 9.98e-83 8c6j:y, 8i0u:M, 8i0v:M, 8i0w:M, 6icz:M, 6id0:M, 6id1:M, 5mqf:N, 6qdv:y, 8ro2:M, 7w59:M, 7w5a:M, 7w5b:M, 5xjc:M, 5yzg:M
2 8ro0:M 196 105 0.3772 0.2194 0.4095 7.63e-18 8ro1:M
3 6pxs:A 370 46 0.1140 0.0351 0.2826 2.0 6pxs:B, 6pxs:C, 6pxs:D
4 8sl7:D 544 37 0.1140 0.0239 0.3514 2.1 8sl7:A, 8sl7:B, 8sl7:C
5 1zfj:A 476 69 0.1579 0.0378 0.2609 2.2
6 5kwk:B 457 35 0.0965 0.0241 0.3143 3.2 5koe:A, 5kor:B, 5kor:C, 5kor:A, 5kor:D, 5kwk:A, 5kx6:A, 5kx6:B
7 4gir:B 411 62 0.1491 0.0414 0.2742 3.3 4ggh:A, 4ggh:B, 4ggh:C, 4ggh:D, 4gir:A, 4gir:C, 4gir:D, 4gis:A, 4gis:B
8 1l4a:B 82 48 0.1316 0.1829 0.3125 4.5
9 6mvf:A 643 46 0.1316 0.0233 0.3261 6.0 6mvf:B, 6mvf:C, 6mvf:D, 6mvf:E, 6mvf:F
10 3jb9:Y 261 128 0.3070 0.1341 0.2734 6.9
11 8sts:A 533 54 0.1404 0.0300 0.2963 8.0 4b3p:A, 6bsi:B, 3kk3:B, 1lw2:A, 7so6:A, 8u6h:C, 8u6t:B
12 5myj:BG 176 36 0.0877 0.0568 0.2778 8.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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