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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KKKPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSIAR
EIYEMYEAVSDAKRIEGFTLSEEILKSDKQLSVDAQFFTKPLTDGMAIRSEGKIYFVDKQASLSDGLWLVDIEGAISIRE
LTKLPGRKLHVAGGKVPFECGIDDIKTLGRVVGVYSEVN

The query sequence (length=199) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7jvt:D 199 199 1.0000 1.0000 1.0000 3.04e-145 7jvt:C
2 3bdn:A 234 90 0.4523 0.3846 1.0000 3.93e-57 3bdn:B, 2hnf:A, 2ho0:A, 1lli:A, 1lli:B, 1lmb:3, 1lmb:4, 1rio:A, 1rio:B
3 3woa:A 413 110 0.3065 0.1477 0.5545 3.15e-22
4 8tac:B 66 47 0.0804 0.2424 0.3404 6.83e-04
5 8i4a:A 1218 65 0.1005 0.0164 0.3077 0.32 8bwo:A, 8i4c:A, 8j3w:A, 8j3z:A, 8xol:A, 8xom:A
6 8iza:A 1246 65 0.1005 0.0161 0.3077 0.33 8iz7:A, 8iz9:A, 8xok:A
7 8bjf:A 1195 62 0.0955 0.0159 0.3065 2.5 8bwp:A, 8bwq:A, 8bwr:A, 8sx7:A, 8sx8:A, 8sxb:A
8 4ab7:H 422 23 0.0603 0.0284 0.5217 4.3 4ab7:D, 3zzf:A, 3zzf:B, 3zzf:C, 3zzf:D, 3zzh:A, 3zzh:B, 3zzh:C, 3zzh:D
9 2bji:A 274 30 0.0653 0.0474 0.4333 5.9 2bji:B
10 4as5:A 274 30 0.0653 0.0474 0.4333 6.1 4as5:B, 4as5:C, 4as5:D
11 5xyi:N 150 61 0.0754 0.1000 0.2459 8.3
12 7plb:B 289 60 0.0804 0.0554 0.2667 9.2 7plb:A, 7plc:A, 7plc:D, 7plc:B, 7plc:C, 7pld:A, 7pld:B
13 2or1:L 63 29 0.0603 0.1905 0.4138 9.8 2or1:R, 1per:L, 1per:R, 1rpe:L, 1rpe:R

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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