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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPADVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDL
NDFATINEVYKQFFDEHQATYPTRSCVQVARLPKDVKLEIEAIAVRS

The query sequence (length=127) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2uyk:C 127 127 1.0000 1.0000 1.0000 4.03e-91 2uyn:A, 2uyn:B, 2uyn:C
2 3vcz:B 127 126 0.7165 0.7165 0.7222 2.28e-65
3 2b33:B 126 127 0.4882 0.4921 0.4882 2.44e-40
4 8yrc:A 125 123 0.4961 0.5040 0.5122 4.09e-40
5 7cd4:A 124 124 0.4567 0.4677 0.4677 2.47e-38 7cd4:C
6 5v4d:A 127 125 0.4016 0.4016 0.4080 2.26e-31 5v4d:B, 5v4d:E
7 3k0t:C 124 125 0.4016 0.4113 0.4080 4.96e-31 3k0t:A, 3k0t:B
8 5hp8:A 108 108 0.3307 0.3889 0.3889 7.39e-21 5hp8:B, 5hp8:C
9 9bk4:A 116 104 0.2677 0.2931 0.3269 1.54e-10 9bjy:A, 9bk4:B, 9bk8:A
10 3lyb:B 137 128 0.2835 0.2628 0.2812 7.96e-08
11 3i3f:A 131 102 0.2126 0.2061 0.2647 2.87e-05 3i3f:B, 3i3f:C
12 8wg4:A 688 50 0.1260 0.0233 0.3200 0.65
13 8ox6:A 575 80 0.1575 0.0348 0.2500 2.1
14 8ox4:A 870 80 0.1575 0.0230 0.2500 2.2
15 7vgh:B 1183 80 0.1575 0.0169 0.2500 2.2 7vgi:B
16 2f4l:C 278 99 0.2126 0.0971 0.2727 2.4 2f4l:A, 2f4l:B, 2f4l:D
17 4tlg:A 396 55 0.1417 0.0455 0.3273 3.0 4tlg:B
18 1w0m:A 225 67 0.1890 0.1067 0.3582 3.2 1w0m:B, 1w0m:C, 1w0m:D, 1w0m:E, 1w0m:F, 1w0m:G, 1w0m:H
19 2jda:B 142 19 0.0709 0.0634 0.4737 6.4 2jd9:A, 2jda:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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