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BioLiP
>protein
KKFTDEQQQQLIGHLTKKGFYRGDIGNILYAERFLLPCIYLLDSVNYRTLCELAFKAIKQDDVLSKIIVRSVVSRLINER
KILQMTDGYQVTALGASYVRSVFDRKTLDRLRLEIMNFENRRKSTFNYDKIPY

The query sequence (length=133) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8qbk:G 133 133 1.0000 1.0000 1.0000 6.45e-96 8qbk:F, 8qbl:G, 8qbm:G, 7v9x:C, 7xjg:C
2 7xjg:J 306 110 0.8271 0.3595 1.0000 5.83e-75 8qbk:E, 8qbk:T, 8qbl:E, 8qbl:F, 8qbl:H, 8qbl:T, 8qbm:E, 8qbm:T, 8qbm:F, 8qbm:H
3 7xjg:J 306 23 0.1729 0.0752 1.0000 3.44e-09 8qbk:E, 8qbk:T, 8qbl:E, 8qbl:F, 8qbl:H, 8qbl:T, 8qbm:E, 8qbm:T, 8qbm:F, 8qbm:H
4 6xwl:C 477 33 0.0977 0.0273 0.3939 4.1 6xwl:F, 6xwl:A, 6xwl:B, 6xwl:D, 6xwl:E, 6xyl:A, 6xyl:B, 6xyl:C, 6xyl:D, 6xyl:E, 6xyl:F, 6y21:D, 6y21:A, 6y21:B, 6z3s:D, 6z3s:A, 6z3s:B, 6zs7:D, 6zs7:A, 6zs7:B, 6zs7:C, 6zs7:E, 6zs7:F
5 2y88:A 244 26 0.0902 0.0492 0.4615 7.7 2y85:A, 2y85:B, 2y85:C, 2y85:D, 3zs4:A
6 7dve:A 498 30 0.0902 0.0241 0.4000 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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