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BioLiP
>protein
KKESLEMRQMRKKVVLIGTGLIGGSLALAIKKDHDVTITGYDIFQEQVERAKELHVVDEIAVDLQHACEEAHLIVFASPV
EETKKLLHKLASFHLREDVIVTDVGSTKGSIMNEAEALFSKEISFIGGHPMAGSHKTGVESAKAHLFENAFYILTPMHHV
PNEHVEELKDWLKGTGSHFLVLNTEEHDYVTGIVSHFPHLIAAGLVKQVEKHAGDNPLIHQLAAGGFKDITRIASSSPKM
WSDIVKQNREHLMVLLKEWISEMEDLYDTVSSGDAGEIQNYFADAKEYRDSLPV

The query sequence (length=294) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5uyy:A 373 292 0.9932 0.7828 1.0000 0.0 7mqv:A, 7mqv:B, 7mqv:C, 7mqv:D, 6u60:A, 6u60:B, 5uyy:B, 5uyy:C, 5uyy:D
2 3b1f:A 286 283 0.3469 0.3566 0.3604 8.21e-59
3 3ggg:D 293 289 0.3197 0.3208 0.3253 6.42e-45 2g5c:A, 2g5c:B, 2g5c:C, 2g5c:D, 3ggg:A, 3ggg:B, 3ggg:C, 3ggo:A, 3ggo:B, 3ggo:D, 3ggo:C, 3ggp:A, 3ggp:B, 3ggp:D, 3ggp:C
4 4wji:A 293 287 0.3163 0.3174 0.3240 3.28e-44
5 2f1k:A 279 280 0.2959 0.3118 0.3107 1.99e-38 2f1k:B, 2f1k:C, 2f1k:D
6 6za2:B 1083 98 0.0952 0.0259 0.2857 0.059 6za2:A
7 2fn7:A 317 46 0.0544 0.0505 0.3478 0.092 2fn7:B, 4nd1:A, 4nd1:B, 4nd2:A, 4nd2:B, 4nd3:A, 4nd3:B, 4nd4:A, 4nd4:B
8 1cli:A 341 122 0.1054 0.0909 0.2541 0.15 1cli:B, 1cli:C, 1cli:D
9 8grv:A 336 134 0.1156 0.1012 0.2537 0.21
10 3om9:A 329 43 0.0578 0.0517 0.3953 0.23 3om9:B, 3om9:C, 3om9:D, 1pzf:A, 1pzf:B, 1pzf:C, 1pzf:D, 1pzg:A, 1pzg:B, 1pzg:C, 1pzg:D, 1pzh:A, 1pzh:B, 1pzh:C, 1pzh:D
11 3gvh:A 318 55 0.0714 0.0660 0.3818 0.42 3gvh:B, 3gvh:C, 3gvh:D, 3gvi:A, 3gvi:B, 3gvi:C, 3gvi:D, 3gvi:E, 3gvi:F
12 3wsw:A 316 81 0.0748 0.0696 0.2716 0.61 3wsw:B, 3wsw:C, 3wsw:D
13 7k5b:B 4524 65 0.0748 0.0049 0.3385 1.1 8bx8:B, 7k58:B, 7kek:B
14 6st5:A 913 49 0.0544 0.0175 0.3265 1.1
15 4ros:A 318 55 0.0714 0.0660 0.3818 1.6 5ujk:A
16 1s05:A 129 86 0.0782 0.1783 0.2674 1.8
17 2hjr:B 314 58 0.0680 0.0637 0.3448 2.2 2hjr:A, 2hjr:C, 2hjr:D, 2hjr:E, 2hjr:F, 2hjr:G, 2hjr:H, 2hjr:I, 2hjr:J, 2hjr:K, 2hjr:L
18 7osn:B 291 135 0.1224 0.1237 0.2667 2.5 7osn:A, 7osn:C, 7osn:D, 7osn:E, 7osn:F
19 4plf:B 330 17 0.0374 0.0333 0.6471 2.6 4plc:A, 4plc:B, 4plc:C, 4plc:D, 4plf:A, 4plg:A, 4plg:B, 6vdj:A
20 4om8:A 309 54 0.0476 0.0453 0.2593 3.2 4om8:B
21 1yge:A 839 43 0.0476 0.0167 0.3256 3.5 3bnb:A, 3bnc:A, 3bnd:A, 3bne:A, 5eeo:A, 1f8n:A, 1fgm:A, 1fgo:A, 1fgq:A, 1fgr:A, 1fgt:A, 3pzw:A, 2sbl:B, 2sbl:A, 7soi:A, 7soi:B, 7soj:A, 7soj:B, 5t5v:A, 5t5v:B, 5tqn:A, 5tqn:B, 5tqo:A, 5tqo:B, 5tqp:A, 5tqp:B, 5tr0:A, 5tr0:B, 4wfo:A, 4wha:A, 1y4k:A
22 4plt:B 319 48 0.0714 0.0658 0.4375 4.4 4plh:A, 4plh:B, 4plh:C, 4plh:D, 4plt:A, 4plt:C, 4plt:D, 4plv:A, 4plv:B, 4plv:C, 4plv:D, 4plw:A, 4plw:B, 4plw:C, 4plw:D, 4ply:B, 4ply:A, 4ply:C, 4ply:D, 4ply:F, 4ply:E, 4ply:G, 4ply:H
23 3ac0:A 841 55 0.0612 0.0214 0.3273 5.2 3ac0:B, 3ac0:C, 3ac0:D
24 1t2e:A 317 36 0.0408 0.0379 0.3333 7.3 4b7u:B, 4b7u:C, 4b7u:D, 1cet:A, 1ldg:A, 1u4o:A, 1u4s:A, 1u5a:A, 1u5c:A, 1xiv:A
25 3f3s:A 312 44 0.0544 0.0513 0.3636 8.1 3f3s:B
26 2a92:C 318 36 0.0374 0.0346 0.3056 8.6 2a92:A, 2a92:B, 2a92:D, 2a94:A, 2aa3:A, 2aa3:B, 2aa3:C, 2aa3:D, 4b7u:A, 5hru:A, 5hru:B, 5hto:A, 5hto:B, 5hto:D, 5hto:E, 1oc4:A, 1oc4:B, 4plz:A, 1t24:A, 1t25:A, 1t26:A, 1t2c:A, 1t2d:A, 6txr:A, 6txr:B, 6txr:C, 6txr:D, 3zh2:A, 3zh2:B, 3zh2:C, 3zh2:D
27 4j34:B 390 37 0.0510 0.0385 0.4054 9.0 4j2w:A, 4j2w:B, 4j31:A, 4j31:B, 4j33:A, 4j33:B, 4j34:A, 4j36:A, 4j36:B, 5x6r:A, 5x6r:B
28 3czm:B 323 17 0.0306 0.0279 0.5294 9.3 3czm:A, 1sow:A, 1sow:B
29 6ct6:B 331 30 0.0408 0.0363 0.4000 9.3 6ct6:A
30 4v9f:P 144 58 0.0578 0.1181 0.2931 9.8 3cc2:P, 3cc4:P, 3cc7:P, 3cce:P, 3ccj:P, 3ccl:P, 3ccm:P, 3ccq:P, 3ccr:P, 3ccs:P, 3ccu:P, 3ccv:P, 3cd6:P, 3cma:P, 3cme:P, 3cpw:O, 3cxc:O, 1ffk:M, 3g4s:P, 3g6e:P, 3g71:P, 3i55:P, 3i56:P, 1jj2:O, 1k73:Q, 1k8a:Q, 1k9m:Q, 1kc8:Q, 1kd1:Q, 1kqs:O, 1m1k:Q, 1m90:Q, 1n8r:Q, 1nji:Q, 2otj:P, 2otl:P, 3ow2:O, 1q7y:Q, 1q81:Q, 1q82:Q, 1q86:Q, 2qa4:P, 2qex:P, 1qvf:O, 1qvg:O, 1s72:P, 1vq4:P, 1vq5:P, 1vq6:P, 1vq7:P, 1vq8:P, 1vq9:P, 1vqk:P, 1vql:P, 1vqm:P, 1vqn:P, 1vqo:P, 1vqp:P, 1w2b:O, 1yhq:P, 1yi2:P, 1yij:P, 1yit:P, 1yj9:P, 1yjn:P, 1yjw:P

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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