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BioLiP
>protein
KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRA

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7d8t:A 199 60 1.0000 0.3015 1.0000 7.59e-39 4ati:A, 4ati:B, 4atk:A, 4atk:B, 7d8t:B, 6g1l:A, 8vu0:A, 8vu0:B
2 7f09:C 67 47 0.6500 0.5821 0.8298 5.18e-21
3 1am9:C 82 59 0.4000 0.2927 0.4068 1.18e-08 1am9:D, 1am9:A, 1am9:B
4 8ia3:E 111 57 0.4167 0.2252 0.4386 1.30e-07 8ia3:A, 8ia3:B, 8ia3:F
5 8hov:A 87 74 0.4167 0.2874 0.3378 9.12e-07 8hov:C, 8hov:B, 8hov:D, 8hov:E, 8hov:F
6 1an4:A 65 57 0.3833 0.3538 0.4035 3.39e-06 1an4:B
7 8ow1:B 116 54 0.3667 0.1897 0.4074 4.58e-06 8ovw:A, 8ovw:B, 8ow0:A, 8ow0:B, 8ow1:A, 7ssa:L, 7ssa:K
8 7f2f:B 94 61 0.4000 0.2553 0.3934 7.05e-06 7f2f:A
9 8osk:M 316 52 0.3167 0.0601 0.3654 3.53e-05 4h10:B, 8osl:M, 8osl:O
10 5nj8:D 134 52 0.3000 0.1343 0.3462 6.89e-05
11 7xi4:A 283 53 0.3000 0.0636 0.3396 1.02e-04 8g4a:A, 8g4a:B, 5nj8:B, 5sy7:A, 5v0l:A, 7xhv:A, 4zph:A, 4zpk:A
12 8osl:N 290 49 0.2833 0.0586 0.3469 1.05e-04 4h10:A, 8osk:N, 8osl:P
13 7xi3:A 287 53 0.2833 0.0592 0.3208 1.33e-04
14 1a0a:A 63 58 0.3167 0.3016 0.3276 2.40e-04 1a0a:B
15 4zpr:A 235 58 0.3333 0.0851 0.3448 8.82e-04
16 2ypa:A 67 47 0.3000 0.2687 0.3830 0.008 2ypb:A
17 5eyo:C 88 55 0.2667 0.1818 0.2909 0.029 1an2:A, 5eyo:A, 1hlo:B, 1nkp:B, 1nkp:E, 1nlw:B, 1nlw:E
18 1hlo:A 80 55 0.2667 0.2000 0.2909 0.048
19 5i50:B 96 66 0.3500 0.2188 0.3182 0.11 5i50:A, 1nkp:A, 1nkp:D
20 5gnj:B 77 51 0.2667 0.2078 0.3137 0.19 5gnj:G, 5gnj:I, 5gnj:A, 5gnj:E, 5gnj:F, 5gnj:M, 5gnj:N
21 5nj8:A 176 44 0.2167 0.0739 0.2955 0.34 5nj8:C, 5v0l:B
22 6od3:A 62 48 0.2667 0.2581 0.3333 1.7 6od3:B, 6od3:H, 6od3:E, 6od3:F, 6od4:A, 6od4:B, 6od5:A, 6od5:B, 6od5:C, 6od5:D, 8osb:A
23 1nlw:A 79 59 0.2500 0.1899 0.2542 2.8 1nlw:D
24 6s8r:A 167 33 0.2500 0.0898 0.4545 4.1
25 7eap:A 755 29 0.1833 0.0146 0.3793 4.6 5yot:A, 5yot:B, 5yqs:A, 5yqs:B
26 5hux:A 429 38 0.2167 0.0303 0.3421 6.9 5htp:A, 5hv7:A
27 2wnb:A 273 19 0.1500 0.0330 0.4737 7.0 2wnf:A
28 5xvu:A 321 30 0.2167 0.0405 0.4333 7.5 5xvu:B, 5xvu:C
29 2ypb:B 74 48 0.2500 0.2027 0.3125 7.6 2ql2:A, 2ql2:C, 2ypa:B
30 7xi3:B 314 43 0.2167 0.0414 0.3023 8.2 7xhv:B, 7xi4:B
31 4ls8:A 416 38 0.2000 0.0288 0.3158 9.0 4ls7:A, 4ls7:B, 4ls8:B
32 6g90:T 462 28 0.1500 0.0195 0.3214 9.5 7dco:u, 4dgw:A, 5nrl:T, 5zwm:u
33 4v6w:CC 392 54 0.2167 0.0332 0.2407 9.6 6xu6:CC, 6xu7:CC, 6xu8:CC

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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