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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KKAQVISPVNGDPFVGMLETPVTSAPIVATYLSNLPAYRTGVAPVLRGVEIGLAHGFLLAGPFIKLGPLRNVPETAEIAG
SLSAAGLVLILALCLSIYGSAQFQSTPSIGVKTLSGRSVARDPLFSADGWSEFAAGFLVGGEAGVAWAYVCTQILPYYS

The query sequence (length=159) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7d0j:L 159 159 1.0000 1.0000 1.0000 1.91e-112 7bgi:L, 7blx:L, 7dz7:L, 7dz8:L, 8h2u:L, 7zq9:L, 7zqc:L, 7zqd:L, 7zqd:L2
2 6sl5:L 155 151 0.7421 0.7613 0.7815 1.42e-81
3 7yca:L 158 159 0.6792 0.6835 0.6792 1.03e-78
4 6zzx:L 157 158 0.7044 0.7134 0.7089 2.74e-78 6zzy:L
5 6jo5:L 118 136 0.7421 1.0000 0.8676 6.05e-76 6ijj:L, 6ijo:L, 6jo6:L, 7zq9:L2
6 6igz:L 155 154 0.7044 0.7226 0.7273 1.66e-72
7 7a4p:L 140 157 0.6352 0.7214 0.6433 3.16e-67
8 8cmo:L 123 136 0.5975 0.7724 0.6985 5.29e-59
9 8htu:L 163 164 0.6038 0.5890 0.5854 3.58e-58 7ksq:L, 7kux:L, 6l35:L, 7xqp:L
10 8wgh:L 162 162 0.5597 0.5494 0.5494 9.25e-52
11 2o01:L 164 159 0.6226 0.6037 0.6226 7.04e-49 7wfd:AL, 7wg5:AL, 2wsc:L, 2wse:L, 2wsf:L
12 8wm6:L 151 155 0.4654 0.4901 0.4774 4.94e-46 8wmj:L, 8wmv:L, 8wmw:L
13 4rku:L 163 158 0.5849 0.5706 0.5886 5.84e-46 7dkz:L, 8j6z:L, 8j7a:L, 8j7b:L, 5l8r:L, 3lw5:L, 7wfe:BL, 7wg5:BL, 4xk8:L, 4xk8:l, 4y28:L, 6yac:L, 6yez:L, 6zoo:L, 6zxs:L
14 5zji:L 166 159 0.5723 0.5482 0.5723 4.13e-45 8bcv:L, 8bcw:L, 7ew6:L, 7ewk:L, 7f9o:L, 7f9o:o
15 7y5e:LN 140 153 0.4654 0.5286 0.4837 1.11e-44 7y5e:L2, 7y7a:L7, 7y7a:Lo
16 7y7b:L 150 147 0.4277 0.4533 0.4626 7.00e-43 7y8a:L
17 7fix:L1 152 146 0.4151 0.4342 0.4521 1.13e-40 4fe1:L, 7fix:L2, 7fix:L3, 1jb0:L, 6k33:aL, 6k33:bL, 6k33:cL, 6lu1:L, 7m75:L, 7m76:L, 7m78:L, 3pcq:L, 6pfy:L, 6pfy:h, 6pfy:U, 6pgk:L, 6pgk:h, 6pgk:U, 6tra:L, 6trc:L, 6trc:l, 6trc:0, 6trd:L, 6trd:l, 6trd:0, 5zf0:L1, 5zf0:L2, 5zf0:L3, 5zf0:L4, 5zf0:L6, 5zf0:L5
18 6fos:L 140 150 0.4214 0.4786 0.4467 1.15e-39 7blz:L, 5zgb:L, 5zgh:L
19 5oy0:L 157 155 0.4340 0.4395 0.4452 1.66e-39 8am5:l, 8asl:l, 8asp:l, 6hqb:L, 4l6v:L, 4l6v:l, 4l6v:8, 6nwa:L, 6nwa:U, 6nwa:l, 5oy0:l, 5oy0:0, 7umh:L, 7umh:U, 7umh:l, 6uzv:L, 6uzv:0, 6uzv:l
20 7dr0:L 131 143 0.4151 0.5038 0.4615 1.09e-37 7dr1:L, 7dr2:aL, 7dr2:bL, 7dr2:cL, 7dr2:dL
21 6kif:L 164 139 0.4277 0.4146 0.4892 2.60e-36 6kif:n, 6kif:V, 6kig:L, 6kig:n, 6kig:V
22 6tcl:L2 167 155 0.4151 0.3952 0.4258 1.07e-35 6jeo:aL, 6jeo:bL, 6jeo:cL, 6jeo:dL, 6k61:L, 6k61:l, 6tcl:L1, 6tcl:LL, 6tcl:L
23 6l4u:L 137 149 0.4717 0.5474 0.5034 3.51e-35
24 6ly5:l 144 152 0.4591 0.5069 0.4803 1.00e-34
25 6kmx:aL 172 153 0.3836 0.3547 0.3987 2.91e-34 6kmx:bL, 6kmx:cL
26 7qco:L 150 142 0.3836 0.4067 0.4296 4.54e-33 7qco:S, 7qco:s, 7qco:l
27 7lx0:U 163 150 0.3333 0.3252 0.3533 1.33e-31 7lx0:L, 7lx0:l, 6pnj:L, 6pnj:U, 6pnj:l
28 7y3f:1 466 138 0.3962 0.1352 0.4565 1.26e-30
29 8wey:L 121 131 0.3585 0.4711 0.4351 4.31e-30
30 7s3d:L 170 148 0.3396 0.3176 0.3649 1.88e-28 7s3d:l, 7s3d:U
31 6vpv:L 160 124 0.3774 0.3750 0.4839 2.73e-28 6vpv:l, 6vpv:0
32 7coy:aL 147 146 0.3648 0.3946 0.3973 1.87e-26 7coy:cL, 7coy:bL, 7dwq:L
33 6kmw:aL 144 134 0.3208 0.3542 0.3806 1.06e-25 6kmw:cL, 6kmw:bL
34 7f4v:aL 129 142 0.3522 0.4341 0.3944 6.89e-17 7f4v:cL, 7f4v:bL
35 8jw0:l 253 133 0.2579 0.1621 0.3083 1.85e-15
36 8jjr:l 253 97 0.2453 0.1542 0.4021 5.30e-15
37 8jze:l 250 90 0.2516 0.1600 0.4444 8.03e-15 8jzf:l
38 4pv2:C 158 38 0.0881 0.0886 0.3684 2.8 4pu6:A, 4pu6:C, 4pv2:A, 4pv3:A, 4pv3:C
39 3suc:A 767 42 0.0881 0.0183 0.3333 7.4 3gq7:A, 3gq8:A, 3gqa:A, 3gqk:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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