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BioLiP
>protein
KIYTKNGDKGQTRIIGKQILYKNDPRVAAYGEVDELNSWVGYTKSLINSHTQVLSNELEEIQQLLFDCGHDLATPADDER
HSFKFKQEQPTVWLEEKIDNYTQVVPAVKKFILPGGTQLASALHVARTITRRAERQIVQLMREEQINQDVLIFINRLSDY
FFAAARYANYLEQQPDMLYR

The query sequence (length=180) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ci1:A 188 180 1.0000 0.9574 1.0000 1.30e-135 3ci3:A, 3ci4:A, 3gah:A, 3gai:A, 3gaj:A, 2nt8:A, 2r6t:A, 2r6t:B, 2r6x:A, 2r6x:B
2 3ke5:A 182 181 0.4722 0.4670 0.4696 4.41e-48 3ke5:C, 3ke5:B
3 7rut:E 187 179 0.3944 0.3797 0.3966 6.56e-38 6d5k:A, 6d5k:C, 6d5k:B, 6d5x:A, 6d5x:C, 6d5x:B, 2idx:A, 2idx:C, 2idx:B, 7rut:D, 7rut:C, 7rut:F, 7rut:B, 7rut:A, 7ruu:A, 7ruu:C, 7ruu:B, 7ruu:D, 7ruv:A, 7ruv:D, 7ruv:B, 7ruv:C
4 2zhz:B 174 182 0.3778 0.3908 0.3736 9.34e-30 2zhz:A, 2zhz:C
5 8d32:A 186 183 0.3833 0.3710 0.3770 2.68e-28 6wgs:A, 6wgv:A, 6wh5:A, 6wh5:B, 6wh5:C
6 2eix:A 243 59 0.0833 0.0617 0.2542 0.45 2eix:B
7 4o6m:B 341 69 0.0944 0.0499 0.2464 2.8 4o6m:A, 4o6n:A, 4o6n:B, 4q7c:A, 4q7c:B
8 1jq5:A 366 78 0.1167 0.0574 0.2692 3.0 1jpu:A, 1jqa:A
9 7dbe:B 332 66 0.1000 0.0542 0.2727 7.3 7dbe:A, 7dbe:C, 7dbe:D, 7wud:B, 7wud:A, 7wud:C, 7wud:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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