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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KITTVIDIGSNSVRLAVFKKTSQFGFYLLFETKSKVRISEGCYAFNGILQEIPMQRAVKALSEFKEIALKYKSKKILCVA
TSAVRDAPNRLEFVARVKKACGLQIKIIDGQKEALYGGIACANLLHKNSGITIDIGGGSTECALIEKGKIKDLISLDVGT
IRIKEMFLDKDLDVKLAKAFIQKEVSKLPFKHKNAFGVGGTIRALSKVLMKRFDYPIDSLHGYEIDAHKNLAFIEKIVML
KEDQLRLLGVNEERLDSIRSGALILSVVLEHLKTSLMITSGVGVREGVFLSDLLRNHYHKFPPNINPSLISLKDRFLPHE
KHSQKVKKECVKLFEALSPLHKIDEKYLFHLKIAGELASMGKILSVYLAHKHSAYFILNALSYGFSHQDRAIICLLAQFS
HKKIPKDNAIAHMSAMMPSLLTLQWLSFILSLAENLCLTDSHHLKYTLEKNKLVIHSNDALYLAKEMLPKLVKPIPLTIE
FA

The query sequence (length=482) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6pc1:B 483 482 0.9979 0.9959 0.9979 0.0 6pc1:A, 6pc1:C, 6pc1:D, 6pc2:A, 6pc2:B, 6pc3:A, 6pc3:B
2 1t6c:A 306 301 0.1888 0.2974 0.3023 7.99e-30 2j4r:A
3 8jgp:A 492 459 0.2427 0.2378 0.2549 3.63e-20 8jgo:A, 8jgq:A, 8jgr:A, 8jgt:A
4 8jgw:A 500 417 0.2116 0.2040 0.2446 1.54e-19
5 7epq:A 296 309 0.1701 0.2770 0.2654 3.89e-15 7epq:B
6 3h1q:B 272 32 0.0394 0.0699 0.5938 5.00e-04 3h1q:A
7 7fax:A 103 93 0.0622 0.2913 0.3226 0.091
8 4czm:A 336 129 0.0726 0.1042 0.2713 0.32 4czf:A, 4czg:A, 4czh:A, 4czj:A, 4czj:B, 4czk:A, 4czl:A, 4czm:B
9 8a22:Bm 113 60 0.0373 0.1593 0.3000 0.32 8apn:Bm, 8apo:Bm
10 3zx2:B 399 43 0.0373 0.0451 0.4186 0.34 3zx0:A, 3zx0:B, 3zx0:C, 3zx0:D, 3zx2:A, 3zx2:C, 3zx2:D
11 4xhp:A 723 126 0.0622 0.0415 0.2381 0.58
12 7bvy:A 333 82 0.0539 0.0781 0.3171 1.8 7bvz:A
13 7r2g:B 351 61 0.0394 0.0541 0.3115 4.2 6cpm:C, 6cpm:D, 6crn:A, 6crn:B, 6crn:C, 6crn:D, 6gh9:A, 6gha:A, 6ml1:A, 6ml1:B, 7r2g:A
14 8tzh:A 1485 136 0.0705 0.0229 0.2500 5.0 3d6t:B
15 1jcg:A 335 28 0.0249 0.0358 0.4286 6.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218