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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KISPELLQISPEVQDALKNKKPVVALESTIISHGMPFPQNAQTAIEVEETIRKQGAVPATIAIIGGVMKVGLSKEEIELL
GREGHNVTKVSRRDLPFVVAAGKNGATTVASTMIIAALAGIKVFATGGIGGVHRGAEHTFDISADLQELANTNVTVVCAG
AKSILDLGLTTEYLETFGVPLIGYQTKALPAFFCRTSPFDVSIRLDSASEIARAMVVKWQSGLNGGLVVANPIPEQFAMP
EHTINAAIDQAVAEAEAQGVIGKESTPFLLARVAELTGGDSLKSNIQLVFNNAILASEIAKEYQRLA

The query sequence (length=307) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4gik:A 307 306 0.9967 0.9967 1.0000 0.0 4gij:A, 4gik:B, 4gik:C, 4gil:A, 4gil:B, 4gil:C, 4gim:A, 4gim:B, 4gim:C
2 8k06:B 304 301 0.4886 0.4934 0.4983 2.62e-94 8k06:A, 8k06:C
3 4ex9:A 302 296 0.4169 0.4238 0.4324 2.45e-62 4ex8:A
4 1vkm:A 292 293 0.3648 0.3836 0.3823 2.49e-56 1vkm:C, 1vkm:B, 1vkm:D, 1vkm:E, 1vkm:F
5 3m0f:A 203 59 0.0521 0.0788 0.2712 0.62 3m0f:B
6 7ukz:E 299 51 0.0554 0.0569 0.3333 3.4 7ukz:A, 7ukz:B, 7ukz:C, 7ukz:D, 7ukz:F
7 7u2s:A 248 42 0.0489 0.0605 0.3571 5.8 7u2s:B
8 7yyp:A 597 72 0.0717 0.0369 0.3056 5.8 7yzn:A, 7zag:7, 7zah:7, 7zki:7
9 1rkq:A 271 22 0.0358 0.0406 0.5000 6.7 1rkq:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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