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BioLiP
>protein
KIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKCNRKKMTYQKMARALRNYGKTGEVKKVKKKL
TYQFSGEVL

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8eo4:F 95 89 0.9888 0.9263 0.9888 2.34e-60 8e3k:F, 8e3r:F, 8e4h:F, 8e5y:F, 8ebh:F, 8ee9:F, 8ej6:F, 8ej8:F, 8ek3:F, 8ek8:F, 8ek8:E, 8ekj:F, 8eku:F, 8ekv:F, 8ekz:F, 8em9:F, 8emd:F, 8eng:F, 8eo1:F, 8eqg:F, 8eqk:F, 8eql:F, 8evh:O, 8evi:O, 8evj:O, 1pue:E, 1pue:F, 8smh:F, 8smj:F, 8sp1:F, 8t9u:F, 8vdh:F, 8vdi:F
2 1awc:A 110 88 0.3933 0.3182 0.3977 1.25e-12
3 1yo5:C 88 87 0.3708 0.3750 0.3793 9.28e-11
4 1dux:C 86 84 0.3596 0.3721 0.3810 4.76e-10 1dux:F
5 7jsa:J 88 86 0.3596 0.3636 0.3721 1.45e-09 7jsl:J, 7jsl:E, 7jsl:H, 7jsl:L
6 8bzm:H 88 85 0.3596 0.3636 0.3765 1.87e-08 8bzm:B
7 3jtg:A 95 83 0.3146 0.2947 0.3373 8.05e-08
8 8e67:F 97 82 0.3258 0.2990 0.3537 2.20e-07 8e66:A, 8e66:F, 8e67:A, 8e67:I, 8e67:L, 4mhg:A
9 4bqa:A 132 85 0.3258 0.2197 0.3412 3.50e-07
10 6da1:B 138 85 0.3258 0.2101 0.3412 5.52e-07 4bqa:D, 4bqa:G, 6da1:A, 6dat:B, 6dat:C, 6dat:D, 6dat:A, 1k78:B, 1k78:F, 1k79:A, 1k79:D, 1k7a:A, 1k7a:D, 4l0y:B, 4l0z:B, 4l18:B, 4l18:F, 4lg0:B, 1mdm:B, 3mfk:A, 3mfk:B, 2nny:A, 2nny:B, 3ri4:A, 3ri4:D, 2stt:A, 2stw:A, 3wts:C, 3wts:H, 3wtt:C, 3wtt:H, 3wtu:C, 3wtu:H, 3wtv:C, 3wtv:H, 3wtw:C, 3wtw:H, 3wtx:C, 3wtx:H, 3wty:C, 3wty:H, 3wu1:B, 5zmc:B
11 6vgd:A 98 85 0.3371 0.3061 0.3529 8.05e-07 5e8g:A, 5e8g:B, 5e8g:C, 5e8g:D, 5e8i:A, 5e8i:D, 5e8i:G, 5e8i:J, 4iri:A, 5jvt:A, 5jvt:D, 5jvt:G, 6vg2:A, 6vg2:D, 6vg8:A, 6vge:A, 6vgg:A, 5ybd:A, 5ybd:X
12 3zp5:A 92 85 0.3371 0.3261 0.3529 9.17e-07
13 1hbx:G 112 68 0.3034 0.2411 0.3971 1.40e-05 1bc7:C, 1bc8:C, 1hbx:H, 1k6o:A
14 1os1:A 537 19 0.0899 0.0149 0.4211 1.8 1aq2:A, 6asi:A, 6asm:A, 6asn:A, 6at2:A, 6at3:A, 6at3:B, 6at4:A, 6at4:B, 1ayl:A, 6com:A, 6crt:A, 1k3c:A, 1k3d:A, 2olq:A, 2olr:A, 2pxz:X, 2py7:X, 6v2l:A, 6v2m:A, 6v2n:A
15 6mo6:B 414 23 0.1124 0.0242 0.4348 4.7 8dhk:A, 8dhk:B, 6mo6:A, 6mo6:C, 6mo6:D, 6mp5:A, 6mp5:B, 6mp5:C, 6mp5:D, 6oi5:A, 6oi5:B, 6oi6:A, 6oi6:B, 6oib:A, 6oib:B, 6oic:A, 6oic:B, 6wh6:A, 6wh6:B
16 1t90:A 484 35 0.1348 0.0248 0.3429 6.5 1t90:B, 1t90:C, 1t90:D
17 4mvf:A 408 39 0.1348 0.0294 0.3077 6.6 3pm8:A, 3pm8:B
18 5xxb:p 122 54 0.2022 0.1475 0.3333 7.6
19 5xy3:Q 185 36 0.1461 0.0703 0.3611 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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