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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KIPVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNPMWYLNLKANPKVQVQIKKEVLDLTARDATDEERAEY
WPQLVTMYPSYQDYQSWTDRTIPIVVCEP

The query sequence (length=109) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3r5r:A 109 109 1.0000 1.0000 1.0000 2.19e-78 3r5r:B, 3r5r:C, 3r5r:D, 3r5r:E, 3r5w:A, 3r5w:M, 3r5w:B, 3r5w:N, 3r5w:C, 3r5w:K, 3r5w:D, 3r5w:L, 3r5w:E, 3r5w:O
2 3r5y:D 142 107 0.4587 0.3521 0.4673 9.86e-30 3r5y:A, 3r5y:B, 3r5y:C
3 6wta:A 137 107 0.4679 0.3723 0.4766 8.37e-29 4y9i:A
4 3r5z:A 140 107 0.4495 0.3500 0.4579 3.23e-27 3r5z:B
5 7kl8:A 140 107 0.4312 0.3357 0.4393 1.39e-25 7kl8:B
6 1yb5:A 324 63 0.1651 0.0556 0.2857 0.24 1yb5:B
7 2hq9:B 138 73 0.1927 0.1522 0.2877 0.33 2hq9:A
8 4rkm:B 660 86 0.2385 0.0394 0.3023 0.84 4rkm:A, 4rkm:I, 4rkm:C, 4rkm:D, 4rkm:K, 4rkm:E, 4rkm:F, 4rkm:H, 4rkm:L, 4rkm:J, 4rkm:G, 4rkn:A, 4rkn:C, 4rkn:B, 4rkn:D
9 8u7h:C 1111 62 0.1743 0.0171 0.3065 1.2
10 8smc:C 1084 62 0.1743 0.0175 0.3065 1.2
11 4m0c:A 212 32 0.1009 0.0519 0.3438 1.2 4m0c:B
12 3tox:A 254 31 0.1193 0.0512 0.4194 1.4 3tox:B, 3tox:C, 3tox:D, 3tox:E, 3tox:F, 3tox:G, 3tox:I
13 7krm:C 244 66 0.1743 0.0779 0.2879 3.0 7krm:A, 7krm:B, 7krm:D
14 7ugh:A 436 52 0.1468 0.0367 0.3077 3.3 7ugh:B
15 6ah0:w 443 58 0.1651 0.0406 0.3103 4.0 6ahd:w, 8ch6:J, 8h6e:2F, 8h6j:2F, 8h6k:2F, 8h6l:2F, 7qtt:J, 5z56:w, 5z57:w, 5z58:w
16 6can:A 616 31 0.1193 0.0211 0.4194 4.8 6can:B, 5t88:A, 5t88:B
17 8q0a:R 96 28 0.1101 0.1250 0.4286 4.9 7dgq:I, 7dgr:I, 7dgs:I, 7dgz:I, 7dh0:I, 7dkf:I2, 5lnk:b, 5o31:R, 8q0f:R, 8q0j:R, 8q0m:R, 8q0o:R, 8q0q:R, 8q1p:R, 8q1u:R, 8q1y:R, 8q25:R, 8q45:R, 8q46:R, 8q47:R, 8q48:R, 8q49:R, 8q4a:R, 6q9d:S6, 6qa9:S6, 6qbx:S6, 6qc2:S6, 6qc3:S6, 6qc4:S6, 6qc5:S6, 6qc6:S6, 6qc7:S6, 6qc8:S6, 7qsd:R, 7qsk:R, 7qsl:R, 7qsm:R, 7qsn:R, 7qso:R, 7r41:R, 7r42:R, 7r43:R, 7r44:R, 7r45:R, 7r46:R, 7r47:R, 7r48:R, 7r4c:R, 7r4d:R, 7r4f:R, 7r4g:R, 8ud1:1R, 8ueo:1R, 8uep:1R, 8ueq:1R, 8uer:1R, 8ues:1R, 8uet:1R, 8ueu:1R, 8uev:1R, 8uew:1R, 8uex:1R, 8uey:1R, 8uez:1R, 8ugh:1R, 8ugi:1R, 8ugj:1R, 8ugn:1R, 8ugn:5R, 8ugr:1R, 8ugr:5R, 7v2c:T, 7v2d:T, 7v2e:T, 7v2f:T, 7v2h:T, 7v2k:T, 7v2r:T, 7v30:T, 7v31:T, 7v32:T, 7v33:T, 7v3m:T, 7vb7:T, 7vbn:T, 7vbz:T, 7vwj:T, 7vxp:T, 7vxu:T, 7vy8:T, 7vya:T, 7vyf:T, 7vyh:T, 7vyn:T, 7vz1:T, 7vzv:T, 7vzw:T, 7w00:T, 7w0h:T, 7w0r:T, 7w0y:T, 7w1o:T, 7w1p:T, 7w1t:T, 7w1u:T, 7w1v:T, 7w1z:T, 7w20:T, 7w2k:T, 7w2l:T, 7w2r:T, 7w2u:T, 7w2y:T, 7w31:T, 7w32:T, 7w35:T, 7w4c:T, 7w4d:T, 7w4e:T, 7w4f:T, 7w4g:T, 7w4j:T, 7w4k:T, 7w4l:T, 7w4m:T, 7w4n:T, 7w4q:T, 7zd6:b, 7zdh:b, 7zdj:b, 7zdm:b, 7zdp:b, 7zeb:b, 6zk9:b, 6zkc:b, 6zkd:b, 6zke:b, 6zkf:b, 6zkg:b, 6zkh:b, 6zki:b, 6zkj:b, 6zkk:b, 6zkl:b, 6zkm:b, 6zkn:b, 6zko:b, 6zkp:b, 6zkq:b, 6zkr:b, 6zks:b, 6zkt:b, 6zku:b, 6zkv:b
18 5nv9:A 480 24 0.0917 0.0208 0.4167 5.0 5nva:A
19 7cax:D 238 28 0.0917 0.0420 0.3571 5.4 7cax:B
20 8gcc:A 707 50 0.1193 0.0184 0.2600 5.4 8gcc:B
21 6ff7:9 432 58 0.1651 0.0417 0.3103 5.5
22 8gap:H 384 29 0.0917 0.0260 0.3448 5.7
23 1kqf:A 982 60 0.1284 0.0143 0.2333 6.1 1kqg:A
24 8i0p:w 434 58 0.1651 0.0415 0.3103 6.2 7abh:4, 7abi:4, 7evo:C, 8hk1:C, 8i0r:w, 8i0s:w, 8i0t:w, 8i0u:w, 7onb:N, 7q3l:9, 7q4o:9, 7q4p:9, 6qx9:A3, 8r08:9, 8rm5:9, 7vpx:C, 6y50:9
25 1no3:A 851 70 0.1927 0.0247 0.3000 6.7 1hu9:A, 1ik3:A, 1jnq:A, 1lnh:A, 1n8q:A, 1rov:A, 1rrh:A, 1rrl:A, 1rrl:B
26 3ej3:C 64 27 0.0826 0.1406 0.3333 7.5 3ej3:A, 3ej3:E, 3ej3:G, 3ej3:I, 3ej3:K
27 6wmr:Z 470 26 0.0917 0.0213 0.3846 7.9 6wmt:Z
28 6eac:A 476 37 0.1468 0.0336 0.4324 8.2 6eac:B, 6eac:C, 6eac:D
29 7unr:p 81 59 0.1284 0.1728 0.2373 9.2 8cd1:p, 6spc:p, 6spe:p, 6spf:p, 6spg:p, 7unu:p, 7unv:p, 7unw:p
30 3v8x:A 853 87 0.2661 0.0340 0.3333 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218