Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KIPGYTYGETENRAPFNLEDLKLLKEAVMFTAEDEEYIQKAGEVLEDQVEEILDTWYGFVGSHPHLLYYFTSPDGTPNEK
YLAAVRKRFSRWILDTSNRSYDQAWLDYQYEIGLRHHRTKKNQTDNVESVPNIGYRYLVAFIYPITATMKPFLARKGHTP
EEVEKMYQAWFKATTLQVALWSYPYVKYGDF

The query sequence (length=191) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3zjh:B 193 191 0.9948 0.9845 0.9948 1.29e-142 3qzx:A, 3qzz:A, 3r0g:A, 3r0g:B, 2veb:A, 2vee:A, 2vee:B, 2vee:C, 2vee:D, 2vee:E, 2vee:F, 2vee:G, 2vee:H, 3zh0:A, 3zh0:B, 3zh0:C, 3zh0:D, 3zjh:A, 3zji:A, 3zji:B, 3zjj:A, 3zjj:B, 3zjj:C, 3zjl:A, 3zjl:B, 3zjm:A, 3zjm:B, 3zjm:C, 3zjn:A, 3zjn:B, 3zjo:A, 3zjo:B, 3zjp:A, 3zjq:A, 3zjq:B, 3zjr:A, 3zjs:A, 3zjs:B, 3zol:A, 3zol:B, 3zom:A, 3zom:B
2 7ute:A 190 191 0.5654 0.5684 0.5654 9.60e-77 8eum:A, 8eum:B, 8eum:C, 8eum:D, 8eun:A, 8eun:B, 7ute:B, 7ute:C, 7ute:D
3 1qax:A 425 60 0.1047 0.0471 0.3333 1.7 8gdn:A, 8gdn:B, 4i4b:A, 4i4b:B, 4i56:A, 4i56:B, 4i6a:A, 4i6a:B, 4i6w:A, 4i6w:B, 4i6y:A, 4i6y:B, 1qax:B, 1qay:A, 1qay:B, 1r31:A, 1r31:B, 8sz6:A, 8sz6:B, 1t02:A, 8vlq:A, 8vlq:B
4 5kzt:B 510 37 0.0681 0.0255 0.3514 2.4 5kzt:A
5 6j9e:C 1288 108 0.1466 0.0217 0.2593 3.2
6 4p6p:B 218 31 0.0576 0.0505 0.3548 4.9 4p6c:A, 4p6c:B, 4p6d:A, 4p6d:B, 4p6p:A, 4p77:A, 4p77:B, 4p8e:A, 4p8e:B, 7uf0:A, 7uf1:A, 7uf2:A, 7uf3:A, 7uf4:A, 7uf5:A
7 7v2c:p 178 86 0.1309 0.1404 0.2907 6.0 5gup:p, 5lnk:t, 8q0a:n, 8q0f:n, 8q0j:n, 8q0m:n, 8q0o:n, 8q0q:n, 8q1p:n, 8q1u:n, 8q1y:n, 8q25:n, 8q45:n, 8q46:n, 8q47:n, 8q48:n, 8q49:n, 8q4a:n, 6q9b:B9, 6qa9:B9, 6qbx:B9, 6qc2:B9, 6qc3:B9, 6qc4:B9, 6qc5:B9, 6qc6:B9, 6qc7:B9, 6qc8:B9, 6qca:B9, 6qcf:B9, 7qsd:n, 7qsk:n, 7qsl:n, 7qsm:n, 7qsn:n, 7qso:n, 7r41:n, 7r42:n, 7r43:n, 7r44:n, 7r45:n, 7r46:n, 7r47:n, 7r48:n, 7r4c:n, 7r4d:n, 7r4f:n, 7r4g:n, 8ud1:1n, 8ueo:1n, 8uep:1n, 8ueq:1n, 8uer:1n, 8ues:1n, 8uet:1n, 8ueu:1n, 8uev:1n, 8uew:1n, 8uex:1n, 8uey:1n, 8uez:1n, 8ugh:1n, 8ugi:1n, 8ugj:1n, 8ugn:1n, 8ugn:5n, 8ugr:1n, 8ugr:5n, 7v2d:p, 7v2e:p, 7v2f:p, 7v2h:p, 7v2k:p, 7v2r:p, 7v30:p, 7v31:p, 7v32:p, 7v33:p, 7v3m:p, 7vbl:p, 7vbp:p, 7vc0:p, 7vwl:p, 7vxs:p, 7vy1:p, 7vy9:p, 7vye:p, 7vyg:p, 7vyi:p, 7vys:p, 7vz8:p, 7vzv:p, 7vzw:p, 7w00:p, 7w0h:p, 7w0r:p, 7w0y:p, 7w1o:p, 7w1p:p, 7w1t:p, 7w1u:p, 7w1v:p, 7w1z:p, 7w20:p, 7w2k:p, 7w2l:p, 7w2r:p, 7w2u:p, 7w2y:p, 7w31:p, 7w32:p, 7w35:p, 7w4c:p, 7w4d:p, 7w4e:p, 7w4f:p, 7w4g:p, 7w4j:p, 7w4k:p, 7w4l:p, 7w4m:p, 7w4n:p, 7w4q:p, 5xtc:p, 5xtd:p, 5xth:p, 5xti:p, 5xti:Bp, 7zd6:t, 7zdh:t, 7zdj:t, 7zdm:t, 7zdp:t, 7zeb:t, 6zka:t, 6zkb:t, 6zkc:t, 6zkd:t, 6zke:t, 6zkf:t, 6zkg:t, 6zkh:t, 6zki:t, 6zkj:t, 6zkk:t, 6zkl:t, 6zkm:t, 6zkn:t, 6zko:t, 6zkp:t, 6zkq:t, 6zkr:t, 6zks:t, 6zkt:t, 6zku:t, 6zkv:t
8 8h17:A 157 106 0.1152 0.1401 0.2075 6.8
9 6p7k:A 375 65 0.0995 0.0507 0.2923 6.9

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218