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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KILVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSSISTS
TDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFASNTSSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEV
VKTPMTSQKTLESLVDFSKTLGKHPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLD
YVGLDTTKFIIDGWHEMDSQNPLFQPSPAMNKLVAENKFGKKTGEGFYKYK

The query sequence (length=291) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1f12:A 293 291 0.9381 0.9317 0.9381 0.0 1f0y:A, 1f0y:B, 1f17:A, 1f17:B, 3had:A, 3had:B, 2hdh:A, 2hdh:B, 3hdh:A, 3hdh:B, 3hdh:C, 1il0:A, 1il0:B, 1lsj:A, 1lsj:B, 1lso:A, 1lso:B, 1m75:A, 1m75:B, 1m76:A, 1m76:B
2 4kug:A 282 288 0.4467 0.4610 0.4514 8.96e-79 4kug:B, 4kug:C, 4kug:D, 4kuh:A, 4kuh:B, 4kuh:C, 4kuh:D, 4kuh:E, 4kuh:F, 4kuh:G, 4kuh:H
3 6aa8:E 281 287 0.4330 0.4484 0.4390 1.90e-74 6aa8:F
4 4pzd:A 283 288 0.4055 0.4170 0.4097 7.96e-72 4pzd:B, 4pzd:C, 4pzd:D, 4pzd:E, 4pzd:F, 4pzd:G, 4pzd:H, 4pzd:I, 4pze:A, 4pze:B, 4pze:C, 4pze:D, 4pze:G, 4pze:E, 4pze:F, 4pze:H, 4pze:I
5 4dyd:A 283 290 0.3574 0.3675 0.3586 9.17e-46 4e13:A
6 6ysw:A 707 220 0.3024 0.1245 0.4000 9.44e-46
7 8oqs:B 735 296 0.3471 0.1374 0.3412 2.93e-43 4b3i:A, 4b3i:B, 4b3j:A, 4b3j:B, 7o4s:A, 7o4s:B, 7o4t:A, 7o4t:B, 7o4u:A, 7o4u:B, 7o4v:B, 7o4v:A, 8opu:A, 8opu:B, 8opv:A, 8opv:B, 8oql:A, 8oql:B, 8oqn:A, 8oqn:B, 8oqo:A, 8oqo:B, 8oqp:A, 8oqp:B, 8oqq:A, 8oqq:B, 8oqr:A, 8oqr:B, 8oqs:A, 8oqt:B, 8oqt:A, 8oqu:A, 8oqu:B, 8oqv:A, 8oqv:B, 8pf8:A, 8pf8:B
8 6tnm:A 719 219 0.2921 0.1182 0.3881 1.51e-41
9 6tnm:A 719 83 0.0893 0.0362 0.3133 0.100
10 4om8:A 309 294 0.3196 0.3010 0.3163 1.59e-41 4om8:B
11 1wdl:A 715 210 0.2852 0.1161 0.3952 6.45e-39 2d3t:A, 2d3t:B, 1wdk:A, 1wdk:B, 1wdl:B, 1wdm:A, 1wdm:B
12 1wdl:A 715 98 0.0756 0.0308 0.2245 0.029 2d3t:A, 2d3t:B, 1wdk:A, 1wdk:B, 1wdl:B, 1wdm:A, 1wdm:B
13 6iun:B 692 291 0.3333 0.1402 0.3333 1.64e-37 6iun:A
14 6iun:B 692 125 0.1375 0.0578 0.3200 3.36e-05 6iun:A
15 3zwa:A 727 302 0.3471 0.1389 0.3344 3.42e-37 5mgb:A, 5mgb:B, 5omo:A, 5omo:B, 2x58:A, 2x58:B, 6z5f:AAA, 6z5f:BBB, 6z5o:AAA, 6z5v:AAA, 6z5v:BBB, 6zib:AAA, 6zib:BBB, 6zic:AAA, 6zic:BBB, 3zw9:A, 3zw9:B, 3zwa:B, 3zwb:A, 3zwb:B, 3zwc:A, 3zwc:B
16 3zwa:A 727 87 0.0928 0.0371 0.3103 0.003 5mgb:A, 5mgb:B, 5omo:A, 5omo:B, 2x58:A, 2x58:B, 6z5f:AAA, 6z5f:BBB, 6z5o:AAA, 6z5v:AAA, 6z5v:BBB, 6zib:AAA, 6zib:BBB, 6zic:AAA, 6zic:BBB, 3zw9:A, 3zw9:B, 3zwa:B, 3zwb:A, 3zwb:B, 3zwc:A, 3zwc:B
17 3k6j:A 430 288 0.2887 0.1953 0.2917 3.93e-34
18 3k6j:A 430 80 0.0756 0.0512 0.2750 0.082
19 3f3s:A 312 237 0.2405 0.2244 0.2954 3.55e-21 3f3s:B
20 3adp:A 310 237 0.2509 0.2355 0.3080 4.38e-20
21 2cdu:A 451 167 0.1512 0.0976 0.2635 0.007 2cdu:B
22 5er0:A 450 38 0.0550 0.0356 0.4211 0.008 5er0:B, 5er0:C, 5er0:D, 5vn0:A, 5vn0:B, 5vn0:C, 5vn0:D, 5vn0:E, 5vn0:F, 5vn0:G, 5vn0:H, 5voh:A, 5voh:B, 5voh:C, 5voh:D
23 5z2g:A 477 35 0.0515 0.0314 0.4286 0.021 5z2g:B
24 3kve:A 484 33 0.0481 0.0289 0.4242 0.12 3kve:B, 3kve:C, 3kve:D
25 1f8r:A 483 33 0.0447 0.0269 0.3939 0.14 1f8r:B, 1f8r:C, 1f8r:D, 1f8s:A, 1f8s:B, 1f8s:C, 1f8s:D, 1f8s:E, 1f8s:F, 1f8s:G, 1f8s:H, 2iid:A, 2iid:B, 2iid:C, 2iid:D
26 1reo:A 484 33 0.0447 0.0269 0.3939 0.28 1tdk:A, 1tdn:A, 1tdo:A
27 2bi7:A 383 39 0.0481 0.0366 0.3590 0.49 2bi8:A, 3gf4:A, 3gf4:B, 3inr:A, 3inr:B, 3int:A, 3int:B, 3kyb:A, 3kyb:B, 1wam:A
28 7cyx:A 363 29 0.0412 0.0331 0.4138 0.50 7cyx:B
29 6qkg:B 664 47 0.0550 0.0241 0.3404 0.56 6qkg:A, 6qkr:A, 6qkr:B, 6qkx:A
30 8qno:A 421 69 0.0790 0.0546 0.3333 1.0 8qno:B, 7r37:A, 7r37:B, 7r38:A, 7r38:B
31 7jzw:B 306 43 0.0412 0.0392 0.2791 1.0 6b44:B, 6b45:B, 6b47:B, 6b48:B, 7ecv:B, 7ecw:B, 7elm:B, 7elm:L, 7eln:B, 7eln:L, 7eqg:C, 7jzx:B, 7jzy:B, 7jzz:B, 6ne0:B, 7t3j:B, 7t3k:B, 7t3k:b, 7t3l:B, 7t3l:b, 7taw:B, 7taw:b, 7tax:B, 5uz9:B, 6vqv:D, 6vqw:C, 6vqx:C, 6w1x:B, 7we6:B, 7we6:L, 6whi:B, 7yhs:E
32 4mo2:B 365 212 0.1512 0.1205 0.2075 1.1 4mo2:A
33 8hye:C 371 92 0.0893 0.0701 0.2826 1.4 8hye:A, 8hye:B
34 6uzi:C 470 54 0.0584 0.0362 0.3148 2.1 6uzi:A, 6uzi:B, 6uzi:D
35 8any:A4 595 65 0.0619 0.0303 0.2769 2.3 8oir:Ae, 8ois:Ae, 7po2:4, 7qi4:A4, 7qi5:A4, 7qi6:A4, 6zm5:A4, 6zm6:A4
36 3dme:A 366 33 0.0481 0.0383 0.4242 2.4 3dme:B
37 5x1y:B 454 49 0.0550 0.0352 0.3265 2.6 5x1y:A, 5x1y:C, 5x1y:D, 5x1y:E, 5x1y:F
38 5ts5:A 483 33 0.0412 0.0248 0.3636 2.6 4e0v:A, 4e0v:B, 5ts5:B, 5ts5:C, 5ts5:D
39 1ps9:A 671 50 0.0687 0.0298 0.4000 3.5
40 1lss:A 132 43 0.0447 0.0985 0.3023 3.8 1lss:B, 1lss:C, 1lss:D
41 2bc0:A 473 38 0.0481 0.0296 0.3684 3.8 2bc0:B, 2bc1:A, 2bc1:B, 2bcp:A, 2bcp:B
42 8fmw:I 131 56 0.0481 0.1069 0.2500 4.4
43 3cgb:A 444 75 0.0825 0.0541 0.3200 4.7 3cgb:B, 3cgc:A, 3cgc:B, 3cgd:A, 3cgd:B, 3cge:A, 3cge:B
44 3fg2:P 404 38 0.0515 0.0371 0.3947 5.1
45 5cw3:A 248 42 0.0481 0.0565 0.3333 5.1 5cw3:C, 5cw4:A
46 6vpb:B 324 43 0.0550 0.0494 0.3721 5.2
47 5fn0:A 455 34 0.0447 0.0286 0.3824 6.1 5fn0:B, 5fn0:C, 5fn0:D, 6fox:A, 6fox:B, 6foy:A, 6foy:B, 6foz:A, 6foz:B, 6fp0:A, 6fp0:B, 6fp1:A, 6fp1:B, 6fph:A, 6fph:B, 5mzc:A, 5mzc:B, 5mzi:A, 5mzi:B, 5mzk:A, 5mzk:B, 5n7t:A, 5n7t:B, 5na5:A, 5na5:B, 5nab:A, 5nab:B, 5nae:A, 5nae:B, 5nag:A, 5nag:B, 5nah:A, 5nah:B, 5nak:A, 5nak:B, 5x6p:A, 5x6p:B, 5x6q:A, 5y66:A, 5y77:A, 5y77:B, 5y7a:A
48 7o0w:M 336 37 0.0378 0.0327 0.2973 6.6 7o0u:M, 7o0v:M, 7o0x:M
49 2eq6:A 460 56 0.0619 0.0391 0.3214 7.1 2eq6:B, 2eq8:A, 2eq8:B, 2eq8:D, 2eq8:E, 2eq9:A, 2eq9:B, 2eq9:D, 2eq9:E, 2eq9:G, 2eq9:H, 2eq9:J, 2eq9:K
50 8oqx:A 283 57 0.0515 0.0530 0.2632 7.6 8oqx:B, 8ow9:B, 8ow9:A, 8ow9:D, 8ow9:E
51 5oxf:C 601 52 0.0550 0.0266 0.3077 8.5 5oxf:D
52 6gys:B 579 32 0.0378 0.0190 0.3438 8.6 6f07:B, 6gyp:B, 6gys:C, 6gys:J, 6gys:I, 6gyu:B, 7k7g:M, 8ow1:CE
53 2uyy:A 292 48 0.0584 0.0582 0.3542 8.8 2uyy:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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