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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KILHNQNVNSWGPITVTPTTDGGETRFDGQIIVQMENDPVVAKAAANLAGKHAESSVVVQLDSDGNYRVVYGDPSKLDGK
LRWQLVGHGRDHSETNNTRLSGYSADELAVKLAKFQQSFNQAENINNKPDHISIVGCSLVSDDKQKGFGHQFINAMDANG
LRVDVSVRSSELAVDEAGRKHTKDANGDWVQKAENNKVSLSW

The query sequence (length=202) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3fzy:A 216 202 0.9950 0.9306 0.9950 3.47e-149 3eeb:A, 3eeb:B, 3fzy:B, 3gcd:A, 3gcd:B, 3gcd:C, 3gcd:D, 8yja:A, 8yja:B, 8yjc:A
2 8jhz:A 2615 190 0.2228 0.0172 0.2368 4.17e-07
3 7pog:A 2382 194 0.2228 0.0189 0.2320 4.73e-07 4dmw:A, 3ho6:A, 3ho6:B, 4r04:A, 3srz:A, 3ss1:A, 7u2p:A, 7uby:B, 7uby:A, 5uqk:A, 5uql:A
4 8qeo:A 2146 197 0.2574 0.0242 0.2640 1.81e-06
5 8qen:A 2363 197 0.2574 0.0220 0.2640 1.87e-06 9bja:A, 9bja:B, 2bvl:A, 2bvm:A, 6c0b:A, 7lou:A, 7lou:B, 7lov:A, 7lov:B, 3pa8:A, 3pa8:B, 3pee:B, 3pee:A, 7s0y:A, 5uqm:A, 5uqn:A, 5uqt:A, 5uqt:B
6 7ml7:A 1216 192 0.2426 0.0403 0.2552 2.71e-06
7 8y9b:B 1607 192 0.2426 0.0305 0.2552 2.73e-06
8 6oq5:A 2346 199 0.2228 0.0192 0.2261 1.40e-05 6oq7:A, 7s0z:B, 7s0z:A
9 8x2h:A 2363 196 0.2228 0.0190 0.2296 2.82e-05 8jb5:A, 2vkd:A, 2vkd:B, 2vkd:C, 2vkh:A, 2vkh:B, 2vkh:C, 2vl8:A, 2vl8:B, 2vl8:C
10 8x2i:A 2303 196 0.2228 0.0195 0.2296 2.85e-05
11 8y9c:B 1609 192 0.2079 0.0261 0.2188 8.58e-05
12 1ryq:A 64 50 0.0842 0.2656 0.3400 0.80 8oki:I, 8p2i:I, 3p8b:A, 3p8b:C, 3qqc:E
13 6ain:B 395 41 0.0842 0.0430 0.4146 0.89
14 5g5g:B 316 34 0.0693 0.0443 0.4118 4.0 5g5h:B
15 2cww:B 382 53 0.0891 0.0471 0.3396 6.0 2cww:A
16 7tbv:A 682 69 0.0941 0.0279 0.2754 6.3 7tbv:B, 7tbv:C, 7tbv:D
17 7r5n:B 151 20 0.0545 0.0728 0.5500 8.0 7r5n:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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