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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS
TDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEV
IKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLD
YVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK

The query sequence (length=291) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1f12:A 293 291 0.9966 0.9898 0.9966 0.0 1f0y:A, 1f0y:B, 1f17:A, 1f17:B, 3had:A, 3had:B, 2hdh:A, 2hdh:B, 3hdh:A, 3hdh:B, 3hdh:C, 1il0:A, 1il0:B, 1lsj:A, 1lsj:B, 1lso:A, 1lso:B, 1m75:A, 1m75:B, 1m76:A, 1m76:B
2 4kug:A 282 288 0.4570 0.4716 0.4618 8.75e-80 4kug:B, 4kug:C, 4kug:D, 4kuh:A, 4kuh:B, 4kuh:C, 4kuh:D, 4kuh:E, 4kuh:F, 4kuh:G, 4kuh:H
3 6aa8:E 281 287 0.4433 0.4591 0.4495 3.89e-76 6aa8:F
4 4pzd:A 283 288 0.4055 0.4170 0.4097 2.23e-71 4pzd:B, 4pzd:C, 4pzd:D, 4pzd:E, 4pzd:F, 4pzd:G, 4pzd:H, 4pzd:I, 4pze:A, 4pze:B, 4pze:C, 4pze:D, 4pze:G, 4pze:E, 4pze:F, 4pze:H, 4pze:I
5 4dyd:A 283 290 0.3643 0.3746 0.3655 3.13e-47 4e13:A
6 6ysw:A 707 220 0.3093 0.1273 0.4091 2.71e-46
7 8oqs:B 735 296 0.3471 0.1374 0.3412 9.10e-43 4b3i:A, 4b3i:B, 4b3j:A, 4b3j:B, 7o4s:A, 7o4s:B, 7o4t:A, 7o4t:B, 7o4u:A, 7o4u:B, 7o4v:B, 7o4v:A, 8opu:A, 8opu:B, 8opv:A, 8opv:B, 8oql:A, 8oql:B, 8oqn:A, 8oqn:B, 8oqo:A, 8oqo:B, 8oqp:A, 8oqp:B, 8oqq:A, 8oqq:B, 8oqr:A, 8oqr:B, 8oqs:A, 8oqt:B, 8oqt:A, 8oqu:A, 8oqu:B, 8oqv:A, 8oqv:B, 8pf8:A, 8pf8:B
8 4om8:A 309 294 0.3230 0.3042 0.3197 7.75e-42 4om8:B
9 6tnm:A 719 226 0.2990 0.1210 0.3850 4.96e-41
10 6tnm:A 719 53 0.0619 0.0250 0.3396 0.20
11 1wdl:A 715 203 0.2715 0.1105 0.3892 4.09e-38 2d3t:A, 2d3t:B, 1wdk:A, 1wdk:B, 1wdl:B, 1wdm:A, 1wdm:B
12 1wdl:A 715 98 0.0790 0.0322 0.2347 0.006 2d3t:A, 2d3t:B, 1wdk:A, 1wdk:B, 1wdl:B, 1wdm:A, 1wdm:B
13 6iun:B 692 291 0.3299 0.1387 0.3299 8.74e-38 6iun:A
14 6iun:B 692 125 0.1409 0.0592 0.3280 4.92e-05 6iun:A
15 3zwa:A 727 296 0.3402 0.1362 0.3345 9.20e-38 5mgb:A, 5mgb:B, 5omo:A, 5omo:B, 2x58:A, 2x58:B, 6z5f:AAA, 6z5f:BBB, 6z5o:AAA, 6z5v:AAA, 6z5v:BBB, 6zib:AAA, 6zib:BBB, 6zic:AAA, 6zic:BBB, 3zw9:A, 3zw9:B, 3zwa:B, 3zwb:A, 3zwb:B, 3zwc:A, 3zwc:B
16 3zwa:A 727 87 0.0962 0.0385 0.3218 0.002 5mgb:A, 5mgb:B, 5omo:A, 5omo:B, 2x58:A, 2x58:B, 6z5f:AAA, 6z5f:BBB, 6z5o:AAA, 6z5v:AAA, 6z5v:BBB, 6zib:AAA, 6zib:BBB, 6zic:AAA, 6zic:BBB, 3zw9:A, 3zw9:B, 3zwa:B, 3zwb:A, 3zwb:B, 3zwc:A, 3zwc:B
17 3k6j:A 430 288 0.3024 0.2047 0.3056 1.16e-34
18 3k6j:A 430 68 0.0722 0.0488 0.3088 0.098
19 3f3s:A 312 237 0.2302 0.2147 0.2827 1.74e-20 3f3s:B
20 3adp:A 310 237 0.2405 0.2258 0.2954 8.90e-20
21 5er0:A 450 38 0.0550 0.0356 0.4211 0.008 5er0:B, 5er0:C, 5er0:D, 5vn0:A, 5vn0:B, 5vn0:C, 5vn0:D, 5vn0:E, 5vn0:F, 5vn0:G, 5vn0:H, 5voh:A, 5voh:B, 5voh:C, 5voh:D
22 5z2g:A 477 35 0.0515 0.0314 0.4286 0.023 5z2g:B
23 2cdu:A 451 167 0.1478 0.0953 0.2575 0.066 2cdu:B
24 3kve:A 484 33 0.0481 0.0289 0.4242 0.13 3kve:B, 3kve:C, 3kve:D
25 1f8r:A 483 33 0.0447 0.0269 0.3939 0.15 1f8r:B, 1f8r:C, 1f8r:D, 1f8s:A, 1f8s:B, 1f8s:C, 1f8s:D, 1f8s:E, 1f8s:F, 1f8s:G, 1f8s:H, 2iid:A, 2iid:B, 2iid:C, 2iid:D
26 1reo:A 484 33 0.0447 0.0269 0.3939 0.28 1tdk:A, 1tdn:A, 1tdo:A
27 4mo2:B 365 215 0.1478 0.1178 0.2000 0.48 4mo2:A
28 6qkg:B 664 47 0.0550 0.0241 0.3404 0.49 6qkg:A, 6qkr:A, 6qkr:B, 6qkx:A
29 2bi7:A 383 39 0.0481 0.0366 0.3590 0.52 2bi8:A, 3gf4:A, 3gf4:B, 3inr:A, 3inr:B, 3int:A, 3int:B, 3kyb:A, 3kyb:B, 1wam:A
30 7cyx:A 363 29 0.0412 0.0331 0.4138 0.58 7cyx:B
31 8qno:A 421 69 0.0790 0.0546 0.3333 1.0 8qno:B, 7r37:A, 7r37:B, 7r38:A, 7r38:B
32 5x1y:B 454 53 0.0619 0.0396 0.3396 1.3 5x1y:A, 5x1y:C, 5x1y:D, 5x1y:E, 5x1y:F
33 6uzi:C 470 58 0.0619 0.0383 0.3103 1.6 6uzi:A, 6uzi:B, 6uzi:D
34 8hye:C 371 92 0.0859 0.0674 0.2717 2.5 8hye:A, 8hye:B
35 3dme:A 366 33 0.0481 0.0383 0.4242 2.7 3dme:B
36 5ts5:A 483 33 0.0412 0.0248 0.3636 2.7 4e0v:A, 4e0v:B, 5ts5:B, 5ts5:C, 5ts5:D
37 8any:A4 595 65 0.0584 0.0286 0.2615 2.9 8oir:Ae, 8ois:Ae, 7po2:4, 7qi4:A4, 7qi5:A4, 7qi6:A4, 6zm5:A4, 6zm6:A4
38 3cgb:A 444 101 0.1031 0.0676 0.2970 3.2 3cgb:B, 3cgc:A, 3cgc:B, 3cgd:A, 3cgd:B, 3cge:A, 3cge:B
39 6cx6:B 333 116 0.0997 0.0871 0.2500 3.8 6cx6:A, 5eg5:A, 4fr0:A, 4fsd:A, 4kw7:A, 4rsr:A
40 1lss:A 132 43 0.0447 0.0985 0.3023 3.8 1lss:B, 1lss:C, 1lss:D
41 2bc0:A 473 38 0.0481 0.0296 0.3684 3.9 2bc0:B, 2bc1:A, 2bc1:B, 2bcp:A, 2bcp:B
42 1ps9:A 671 50 0.0687 0.0298 0.4000 4.1
43 8fmw:I 131 56 0.0481 0.1069 0.2500 4.3
44 7jzw:B 306 39 0.0344 0.0327 0.2564 4.7 6b44:B, 6b45:B, 6b47:B, 6b48:B, 7ecv:B, 7ecw:B, 7elm:B, 7elm:L, 7eln:B, 7eln:L, 7eqg:C, 7jzx:B, 7jzy:B, 7jzz:B, 6ne0:B, 7t3j:B, 7t3k:B, 7t3k:b, 7t3l:B, 7t3l:b, 7taw:B, 7taw:b, 7tax:B, 5uz9:B, 6vqv:D, 6vqw:C, 6vqx:C, 6w1x:B, 7we6:B, 7we6:L, 6whi:B, 7yhs:E
45 6vpb:B 324 43 0.0550 0.0494 0.3721 5.5
46 3fg2:P 404 38 0.0515 0.0371 0.3947 5.6
47 5fn0:A 455 34 0.0447 0.0286 0.3824 5.8 5fn0:B, 5fn0:C, 5fn0:D, 6fox:A, 6fox:B, 6foy:A, 6foy:B, 6foz:A, 6foz:B, 6fp0:A, 6fp0:B, 6fp1:A, 6fp1:B, 6fph:A, 6fph:B, 5mzc:A, 5mzc:B, 5mzi:A, 5mzi:B, 5mzk:A, 5mzk:B, 5n7t:A, 5n7t:B, 5na5:A, 5na5:B, 5nab:A, 5nab:B, 5nae:A, 5nae:B, 5nag:A, 5nag:B, 5nah:A, 5nah:B, 5nak:A, 5nak:B, 5x6p:A, 5x6p:B, 5x6q:A, 5y66:A, 5y77:A, 5y77:B, 5y7a:A
48 2uyy:A 292 48 0.0584 0.0582 0.3542 8.4 2uyy:D
49 2eq6:A 460 54 0.0584 0.0370 0.3148 9.8 2eq6:B, 2eq8:A, 2eq8:B, 2eq8:D, 2eq8:E, 2eq9:A, 2eq9:B, 2eq9:D, 2eq9:E, 2eq9:G, 2eq9:H, 2eq9:J, 2eq9:K
50 4ffl:A 353 40 0.0447 0.0368 0.3250 10.0 4ffm:A, 4ffn:A, 4ffo:A, 4ffp:A, 4ffr:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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