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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KIEMNFLNKPIVPDTTKVISNFLTHYLITEPVEHVEIEAKLGTLIDLETQNRFEFPVMNETILNPEFNLRTRFESDMTAS
EHKYLNEFLNQAFRDSQKPGRLPFAYKHTKQVDLFYETEDNSRDKIRVSKNQSDNQVLACVKKRRVADLFLYCPNDAFDI
RISISDELPVSMPSGNQQPSLTRLKDRVGYVHQEIKIDLTKTTQNTTERHELEVEFGNIADLRDRAQKAKDGMEAPLFRR
VQLFMDNVRILRREHS

The query sequence (length=256) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4pn1:B 261 261 0.9844 0.9655 0.9655 0.0 4pn1:A, 4pn1:C, 4pn1:D
2 1d8h:A 288 271 0.3203 0.2847 0.3026 1.12e-20 1d8h:B, 1d8h:C, 1d8i:A, 1d8i:B, 1d8i:C
3 6l7x:A 203 88 0.0938 0.1182 0.2727 2.63e-05 6l7w:A, 6l7y:A
4 6l7v:A 180 98 0.1016 0.1444 0.2653 7.78e-05 6l7w:B
5 6qf7:B 244 25 0.0469 0.0492 0.4800 1.7 6b74:B, 6b77:B, 6l63:A, 6l63:C, 6qf7:D, 8r8d:B, 8r8d:A, 6x0s:A, 6x0s:B, 6x0s:C, 6x0t:A, 6x0t:B, 6x0t:C
6 5xs2:A 366 53 0.0664 0.0464 0.3208 1.8 5cei:A, 5hbe:A, 5icp:A, 5idp:A, 6r3s:A, 6t41:A, 6y0a:A
7 7qfw:B 94 61 0.0742 0.2021 0.3115 2.2 7q2z:C
8 8tun:C 258 88 0.0938 0.0930 0.2727 2.8 8tt3:C, 8tt3:D, 8tun:D
9 6dtq:A 391 50 0.0586 0.0384 0.3000 3.8 6dtq:B, 6dtq:C, 6dtq:D
10 6ayi:A 183 78 0.0703 0.0984 0.2308 5.7 6ayi:B, 6ayi:C, 6ayi:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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