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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KIEMNFLNKPIVPDTTKVISNFLTHYLITEPVEHVEIEAKLGTLIDLETQNRFEFPVMNETILNPEFNLRTRFESDMTAS
EHKYLNEFLNQAFRDSQKPGRLPFAYKHTKQVDLFYETEDNDKIRVSKNQSDNQVLACVKKRRVADLFLYCPNDAFDIRI
SISDELPVSMPSGNQQPSLTRLKDRVGYVHQEIKIDLTKTTQNDPVYDTTERHELEVEFGNIADLRDRAQKAKDGMEAPL
FRRVQLFMDNVRILRREHS

The query sequence (length=259) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4pn1:B 261 259 0.9923 0.9847 0.9923 0.0 4pn1:A, 4pn1:C, 4pn1:D
2 1d8h:A 288 274 0.3243 0.2917 0.3066 7.11e-19 1d8h:B, 1d8h:C, 1d8i:A, 1d8i:B, 1d8i:C
3 6l7x:A 203 93 0.0927 0.1182 0.2581 7.43e-04 6l7w:A, 6l7y:A
4 6l7v:A 180 91 0.0888 0.1278 0.2527 0.009 6l7w:B
5 6qf7:B 244 25 0.0463 0.0492 0.4800 1.7 6b74:B, 6b77:B, 6l63:A, 6l63:C, 6qf7:D, 8r8d:B, 8r8d:A, 6x0s:A, 6x0s:B, 6x0s:C, 6x0t:A, 6x0t:B, 6x0t:C
6 5xs2:A 366 53 0.0656 0.0464 0.3208 1.8 5cei:A, 5hbe:A, 5icp:A, 5idp:A, 6r3s:A, 6t41:A, 6y0a:A
7 8tun:C 258 88 0.0927 0.0930 0.2727 2.9 8tt3:C, 8tt3:D, 8tun:D
8 5brp:A 555 86 0.0772 0.0360 0.2326 4.2 5brp:B, 5brp:C, 5brp:D, 5brq:A, 5brq:B, 5brq:C, 5brq:D
9 6ayi:A 183 102 0.0811 0.1148 0.2059 5.5 6ayi:B, 6ayi:C, 6ayi:D
10 7vfq:C 397 224 0.1853 0.1209 0.2143 6.3 7vfq:A, 7vfq:B, 7vfq:D, 7vfr:A
11 2vq1:B 213 49 0.0656 0.0798 0.3469 8.7 2vq1:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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