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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLSLADISAVQSSFGFDQQQLLAY
YNFLTVCKWSVVVNGPFFSFEQSHNNSYVNVACLMLQHINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSD
ATDFIRVVLKQADLSGAICELELICDCGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIVHCTKLNVPFLICSN
TPLSKDLPDDVVAANMFMGVGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLTDCLYLKNLTQTFTSML

The query sequence (length=309) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7wfc:A 309 309 1.0000 1.0000 1.0000 0.0
2 4ypt:A 378 301 0.6408 0.5238 0.6578 3.23e-151 5wfi:A, 5wfi:B
3 6wuu:B 321 305 0.2913 0.2804 0.2951 1.95e-31 9brv:A, 9brv:B, 9brw:A, 9brw:B, 9brw:C, 9brw:D, 9brx:AA, 7cjd:D, 7cjd:A, 7cjd:B, 7cjd:C, 7cjm:B, 7cmd:A, 7cmd:B, 7cmd:C, 7cmd:D, 8cx9:B, 8cx9:A, 8cx9:C, 8cx9:D, 7d47:A, 7d47:B, 7d6h:A, 7d7k:A, 7d7k:B, 7d7l:A, 7d7l:B, 7e35:B, 7e35:A, 8eua:A, 8fwn:A, 8fwo:A, 8g62:A, 8g62:B, 8g62:C, 8iho:A, 8iho:C, 7jir:A, 7jit:A, 7jiv:A, 7jiw:A, 7jn2:A, 7jrn:A, 7jrn:J, 8jux:A, 8jux:B, 7koj:A, 7kok:A, 7kol:A, 7krx:A, 7lbr:A, 7lbr:B, 7lbs:A, 7lbs:B, 7llf:A, 7llf:B, 7llz:A, 7llz:B, 7los:A, 7los:B, 7m1y:A, 7m1y:B, 7nfv:AAA, 7nt4:A, 7nt4:B, 7ofs:A, 7oft:A, 7ofu:AAA, 7qcg:A, 7qch:A, 7qci:A, 7qcj:A, 7qck:A, 7qcm:A, 7rbr:A, 7rbs:A, 7rbs:C, 7rbs:E, 7rbs:G, 7rbs:I, 7rzc:A, 7rzc:B, 7rzc:C, 7sdr:A, 7sdr:B, 7sdr:C, 7sgu:A, 7sgv:A, 7sgw:A, 7sqe:A, 7sqe:B, 7sqe:C, 7tzj:A, 7tzj:B, 8uob:A, 8uuf:A, 8uug:A, 8uuh:A, 8uuu:A, 8uuv:A, 8uuw:A, 8uuy:A, 7uv5:A, 8uvm:A, 8uvm:B, 8uvm:C, 8uvm:D, 8vec:A, 6w9c:A, 6w9c:C, 6wrh:A, 6wuu:A, 6wuu:C, 6wuu:D, 6wx4:D, 6wzu:A, 6xa9:A, 6xa9:C, 6xa9:E, 6xaa:A, 6xg3:A, 7ybg:A
4 3e9s:A 317 302 0.2880 0.2808 0.2947 5.06e-30 2fe8:A, 2fe8:B, 2fe8:C, 7lfu:D, 7lfv:A, 7lfv:B, 4m0w:A, 3mj5:A, 3mj5:B, 4mm3:B, 4ovz:A, 4ovz:B, 4ow0:A, 4ow0:B, 7skq:A, 7skq:B, 7skr:A, 5tl6:B, 5tl6:D, 5tl7:B, 5tl7:D, 5y3e:A, 5y3q:A
5 5v69:A 322 309 0.2977 0.2857 0.2977 1.43e-28 6bi8:A, 6bi8:B, 5ko3:A, 4p16:A, 4pt5:A, 4r3d:B, 4r3d:A, 4rez:A, 4rf0:A, 4rf1:A, 4rna:A, 5v6a:A, 5w8t:A, 5w8t:C, 5w8u:A, 5w8u:C, 4wur:A
6 4x2z:A 301 279 0.2427 0.2492 0.2688 8.14e-15 5bz0:A
7 3mp2:A 211 92 0.0906 0.1327 0.3043 0.008
8 6noz:A 248 112 0.0906 0.1129 0.2500 0.009 7f0u:A, 7f0u:B, 7mc9:A, 7mc9:C, 7mc9:E, 7mc9:G, 7mc9:I, 7mc9:K, 7mc9:M, 7mc9:O
9 6l5t:A 234 78 0.0777 0.1026 0.3077 0.013
10 7oop:M 810 73 0.0680 0.0259 0.2877 0.45 7opc:M, 7opd:M
11 4wvv:A 145 30 0.0421 0.0897 0.4333 0.48 4wvw:A
12 6ln0:A 425 101 0.0744 0.0541 0.2277 0.58
13 3puk:A 552 64 0.0615 0.0344 0.2969 0.94 3puk:B
14 3k7n:A 396 61 0.0615 0.0480 0.3115 2.7
15 8u1z:A 125 49 0.0453 0.1120 0.2857 3.5 7yka:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218