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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KHKNMYDHTEITTDSLLALLGSEKVKIIDVRSADAYNGWRMRGEVRGGHIKGAKSLPAKWLTDPEWLNIVRFKQIRPEDA
IVLYGYTPEECEQTATRFKENGYNNVSVFHRFHPDWTGNDAFPMDRLEQYNRLVPAEWVNGLISGEEIPEYDNDTFIVCH
AHYRNRDAYLSGHIPGATDMDTLALESPETWNRRTPEELKKALEEHGITASTTVVLYGKFMHPDNADEFPGSAAGHIGAI
RLAFIMMYAGVEDVRVLNGGYQSWTDAGFAISKDDVPKTTVPEFGAPIPSRPEFAVDIDEAKEMLQSEDSDLVAVRSYPE
YIGEVSGYNYIKKKGRIPGAIFAEAGSDAYHMENYRNHDHTTREYHEIEDIWAKSGIIPKKHLAFYCGTGWRGSEAWFNA
LLMGWPRVSVYDGGWFEWSNDPENPYETGVP

The query sequence (length=431) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ktv:A 431 430 0.9930 0.9930 0.9953 0.0 6h98:A, 6h99:A, 6h9a:A, 6ktw:A, 6ktx:A, 6ktz:A, 6ku1:A, 6ku1:B, 6ku2:A, 6ku2:E, 6kvw:A, 6kvw:B, 6kvy:A, 6kvz:A, 6kw0:A, 6kw0:B
2 1h4k:X 271 262 0.1671 0.2657 0.2748 5.29e-11
3 1h4k:X 271 130 0.0766 0.1218 0.2538 0.049
4 1orb:A 293 272 0.1601 0.2355 0.2537 9.77e-11
5 4jgt:A 280 261 0.1508 0.2321 0.2490 1.43e-09 4jgt:B, 4jgt:C
6 5wqk:A 293 212 0.1276 0.1877 0.2594 3.61e-09 5wqj:A, 5wqj:B, 5wqk:B
7 5wqk:A 293 104 0.0626 0.0922 0.2596 1.1 5wqj:A, 5wqj:B, 5wqk:B
8 2eg3:A 230 267 0.1601 0.3000 0.2584 5.30e-05 2eg3:B, 2eg4:A, 2eg4:B
9 6mxv:B 251 44 0.0371 0.0637 0.3636 0.077
10 6mxv:B 251 187 0.0882 0.1514 0.2032 0.69
11 1qxn:A 137 65 0.0418 0.1314 0.2769 0.35 1qxn:B
12 6qtz:o 325 109 0.0650 0.0862 0.2569 0.99 6qik:o, 6ri5:o, 6rzz:o, 6s05:o
13 6n8n:W 377 109 0.0650 0.0743 0.2569 1.3 6n8o:W
14 1okg:A 362 188 0.1067 0.1271 0.2447 1.9
15 1cb7:B 483 57 0.0441 0.0393 0.3333 2.3 1cb7:D, 1ccw:B, 1ccw:D, 6h9e:B, 6h9e:D, 6h9f:B, 6h9f:D, 1i9c:B, 1i9c:D
16 4h7u:A 577 66 0.0464 0.0347 0.3030 2.5
17 1gsq:A 202 61 0.0418 0.0891 0.2951 2.7 2gsq:A
18 8t26:A 504 98 0.0626 0.0536 0.2755 6.4 8t1y:A, 8t1z:A, 8t24:A, 8t27:A
19 4xfe:A 306 82 0.0534 0.0752 0.2805 7.2
20 3tp9:A 473 29 0.0278 0.0254 0.4138 7.7 3tp9:B
21 5ey5:B 383 38 0.0325 0.0366 0.3684 8.1 5ey5:D
22 5kzm:B 395 40 0.0348 0.0380 0.3750 8.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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