Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KHFFGRVITALVTPFKLTGVEVDYGVAESLAAHLAENGSDAIIVAGTTGESATLTWSEEYELFRVVKSAVAGTKCRVIAG
AGSNSTEEAIEATKKSAKLGLDGTLQVVPYYNKPPQQGIMAHFRAIANAAPDLPMMLYNIPGRTGINMTAETSIKLAEMC
PNIVALKEASGNLEQFARIRRATSPDFALYSGDDALTLPLLSLGGNGVVSVASHFIGPEIQRMIEHFVDLGNPEEAFRIH
CRYMDLFEALFVMANPIPAKAALRLLGWPVGPTRLPLTDITASAEQQLRQAMIAAGLL

The query sequence (length=298) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ud6:C 299 298 1.0000 0.9967 1.0000 0.0 5ud6:A, 5ud6:B, 5ud6:D
2 5ktl:A 295 289 0.5671 0.5729 0.5848 5.44e-119 5ktl:B
3 1o5k:A 295 302 0.4161 0.4203 0.4106 3.35e-67
4 7kkd:B 306 286 0.3993 0.3889 0.4161 4.44e-65 5f1u:A, 5f1u:B, 5f1u:C, 5f1u:D, 5f1v:A, 5f1v:C, 5f1v:B, 5f1v:D, 7kg2:A, 7kg2:C, 7kg2:B, 7kg2:D, 7kg2:E, 7kg2:F, 7kg5:A, 7kg5:B, 7kg5:C, 7kg5:E, 7kg5:F, 7kg9:A, 7kg9:E, 7kg9:B, 7kg9:C, 7kg9:D, 7kg9:F, 7kh4:A, 7kh4:F, 7kh4:B, 7kh4:C, 7kh4:D, 7kh4:E, 7kk1:A, 7kk1:B, 7kk1:C, 7kk1:D, 7kk1:E, 7kk1:F, 7kkd:A, 7kkd:F, 7kkd:E, 7kkd:C, 7kkd:D, 7kkg:A, 7kkg:D, 7kkg:B, 7kkg:E, 7kkg:C, 7kkg:F, 7kkt:A, 7kkt:F, 7kkt:B, 7kkt:E, 7kkt:C, 7kkt:D, 7kls:A, 7kls:F, 7kls:B, 7kls:C, 7kls:D, 7kls:E, 7klt:A, 7klt:C, 7klt:E, 7klt:F, 7kly:A, 7kly:D, 7kly:B, 7kly:C, 7kly:E, 7kly:F, 7km0:B, 7km0:C, 7km0:A, 7km0:D, 7km0:E, 7km0:F, 7km1:A, 7km1:B, 7km1:C, 7km1:D, 7km1:E, 7km1:F, 7kn9:A, 7kn9:B, 7kn9:C, 7kn9:D, 7kn9:E, 7kn9:F, 7knz:B, 7knz:C, 7knz:A, 7knz:D, 7knz:E, 7knz:F, 7ko3:A, 7ko3:B, 7ko3:C, 7ko3:D, 7ko3:E, 7ko3:F, 7kpc:A, 7kpc:B, 7kpc:C, 7kpc:D, 7kpc:E, 7kpc:F, 7kpe:B, 7kpe:C, 7kpe:A, 7kpe:D, 7kpe:E, 7kpe:F, 7kr7:A, 7kr7:E, 7kr7:B, 7kr7:C, 7kr7:D, 7kr7:F, 7kr8:B, 7kr8:D, 7kto:A, 7kto:B, 7kto:C, 7kto:D, 7kto:E, 7kto:F, 7ku6:D, 7kuz:A, 7kuz:F, 7kuz:B, 7kuz:C, 7kuz:D, 7kuz:E, 7kwf:B, 7kwf:F, 7kwf:A, 7kwf:C, 7kwf:D, 7kwf:E, 7kwn:B, 7kwp:A, 7kwp:B, 7kwp:C, 7kwp:D, 7kwp:E, 7kwp:F, 7kx1:A, 7kxg:A, 7kxg:C, 7kxg:B, 7kxg:D, 7kxg:E, 7kxg:F, 7kxh:A, 7kxh:D, 7kxh:B, 7kxh:C, 7kxh:E, 7kxh:F, 7kz2:A, 7kz2:D, 7kz2:B, 7kz2:C, 7kz2:E, 7kz2:F, 7lcf:A, 7lcf:B, 7lcf:F, 7lcf:C, 7lcf:D, 7lcf:I, 7lcf:E, 7lcf:G, 7lcf:H, 7lcf:J, 7lcf:K, 7lcf:L, 7m06:B, 7m06:C, 7m06:D, 4m19:A, 4m19:B, 4m19:C, 4m19:D, 4mlr:A, 4mlr:D, 4mlr:C, 4mlr:E, 4mlr:F, 4mlr:G, 4mlr:H, 6u01:B
5 4pfm:A 295 293 0.4128 0.4169 0.4198 6.21e-65 4pfm:B
6 5t25:A 293 298 0.4161 0.4232 0.4161 5.14e-64 2ats:A, 2ats:B, 3i7s:A, 3i7s:B, 7jz8:A, 7jz8:B, 7jza:A, 7jza:B, 7jzb:A, 7jzb:B, 7jzg:A, 7jzg:B, 5t25:B, 1yxd:A, 1yxd:B
7 4fha:A 307 273 0.3725 0.3616 0.4066 8.52e-62 4fha:B
8 4dxv:A 291 291 0.3758 0.3849 0.3849 5.35e-61 3pue:B, 3pul:B, 3rk8:A, 3rk8:B, 3tak:A, 3tak:B, 3tce:A, 3tce:B, 3tdf:A, 3tdf:B, 3u8g:A, 3u8g:B
9 5j5d:A 297 295 0.4128 0.4141 0.4169 5.83e-61 3l21:B, 1xxx:A, 1xxx:B, 1xxx:C, 1xxx:D, 1xxx:E, 1xxx:F, 1xxx:G, 1xxx:H
10 3puo:A 292 291 0.4027 0.4110 0.4124 2.30e-58 3puo:B, 3s8h:A, 3s8h:B
11 3di1:B 291 296 0.3691 0.3780 0.3716 2.79e-51 3di1:A
12 7lvl:A 296 279 0.3423 0.3446 0.3656 3.41e-47 7lvl:B, 7lvl:C, 7lvl:E, 7lvl:D, 7lvl:F, 7mjf:A, 7mjf:B, 7mjf:C, 7mjf:D, 7mjf:E, 7mjf:F
13 4i7w:A 294 297 0.3490 0.3537 0.3502 2.29e-44 4i7w:B
14 5ui3:C 306 283 0.3121 0.3039 0.3286 1.80e-39 5ui3:D, 5ui3:A, 5ui3:B
15 6vvh:BBB 313 274 0.3054 0.2907 0.3321 2.80e-35 4dpq:A, 4dpq:B, 7mds:A, 7mds:B, 6vvh:AAA, 6vvh:CCC, 6vvh:DDD
16 4hnn:F 320 272 0.2953 0.2750 0.3235 1.06e-30 4hnn:A, 4hnn:B, 4hnn:C, 4hnn:D, 4hnn:E, 4hnn:G, 4hnn:H
17 8u8w:A 297 201 0.2282 0.2290 0.3383 1.25e-26
18 1f74:A 293 292 0.2785 0.2833 0.2842 1.33e-26 1f73:A, 1f73:B, 1f73:C, 1f73:D, 1f74:C, 1f7b:A, 1f7b:C
19 2wpb:A 302 219 0.2282 0.2252 0.3105 3.08e-26 4bwl:A, 4bwl:B, 4bwl:C, 4bwl:D, 1fdy:A, 1fdy:B, 1fdy:C, 1fdy:D, 1fdz:A, 1fdz:B, 1fdz:C, 1fdz:D, 1hl2:A, 1hl2:B, 1hl2:C, 1hl2:D, 3lbc:D, 3lcw:A, 3lcw:B, 3lcw:C, 3lcw:D, 4uui:A, 4uui:B, 4uui:C, 4uui:D, 2wkj:C, 2wkj:D, 2wpb:B, 2wpb:C, 2wpb:D, 2xfw:A, 2xfw:B, 2xfw:C, 2xfw:D
20 4img:A 293 272 0.2550 0.2594 0.2794 2.43e-25 4imf:A, 4imf:B, 4img:B
21 3na8:A 291 271 0.2450 0.2509 0.2694 1.40e-21 3na8:B, 3na8:C, 3na8:D
22 3nev:A 298 280 0.2450 0.2450 0.2607 5.04e-19 3nev:B, 3nev:C, 3nev:D, 4oe7:A, 4oe7:B, 4oe7:C, 4oe7:D, 4onv:A, 4onv:B, 4onv:C, 4onv:D, 4ptn:A, 4ptn:B, 4ptn:C, 4ptn:D, 4u4m:A, 4u4m:B, 4u4m:C, 4u4m:D
23 4woq:C 290 221 0.1946 0.2000 0.2624 7.68e-19 4woq:D, 4woq:E, 4woq:F, 4woq:H, 4woz:B, 4woz:F
24 6g3z:A 293 284 0.2349 0.2389 0.2465 7.79e-17 6g3z:B, 6gt8:A, 6gt8:B, 6gv2:A, 6gv2:B, 6h2s:A, 6h2s:B, 6h2s:C, 6h2s:D, 6h7s:A, 6h7s:B, 1w3i:A, 1w3i:B, 1w3i:C, 1w3i:D, 1w3n:A, 1w3n:B, 1w3n:C, 1w3n:D, 1w3t:A, 1w3t:B, 1w3t:C, 1w3t:D
25 3qfe:A 305 230 0.1913 0.1869 0.2478 1.23e-15
26 5kzd:A 284 284 0.2517 0.2641 0.2641 1.57e-15 5kzd:B, 5kzd:C, 5kzd:D
27 6rb7:A 305 267 0.1946 0.1902 0.2172 2.92e-15 6rb7:B, 6rb7:E, 6rb7:F, 6rd1:A, 6rd1:B
28 5c55:A 307 210 0.2013 0.1954 0.2857 1.57e-14 5c55:B
29 2r94:A 286 295 0.2550 0.2657 0.2576 1.19e-13 2r94:D, 2r94:B, 2r94:C
30 5hwn:B 310 280 0.2550 0.2452 0.2714 3.58e-13 5hwm:A, 5hwm:B, 5hwm:C, 5hwm:D, 5hwn:A, 5hwn:C, 5hwn:D, 4ur8:A, 4ur8:B, 4ur8:C, 4ur8:D
31 2nuy:A 288 287 0.2483 0.2569 0.2578 1.53e-12 2nuy:B
32 2hmc:A 314 226 0.2081 0.1975 0.2743 5.36e-08
33 8do5:B 324 120 0.1141 0.1049 0.2833 9.96e-08 8do5:A
34 1g28:A 104 50 0.0503 0.1442 0.3000 0.25 1g28:B, 1g28:C, 1g28:D, 1jnu:A, 1jnu:B, 1jnu:C, 1jnu:D
35 3pjr:A 646 69 0.0805 0.0372 0.3478 0.56 2pjr:A, 2pjr:B, 2pjr:F, 2pjr:G, 1qhh:A, 1qhh:D
36 5h1k:B 690 115 0.1208 0.0522 0.3130 1.1 5gxh:A, 5gxi:A, 5h1k:A, 5h1l:A, 5h1m:A, 5h3u:A, 5tef:A, 5tha:A
37 1qhg:A 622 37 0.0403 0.0193 0.3243 2.1
38 5kar:A 412 27 0.0403 0.0291 0.4444 5.2 5kas:A
39 2z36:B 404 52 0.0570 0.0421 0.3269 6.0 2z36:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218