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BioLiP
>protein
KGRLIEVTEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVHRWVNYESMLKECLVGRMA
IKPAVLK

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3lf5:A 87 87 1.0000 1.0000 1.0000 1.58e-62 3lf5:B
2 8tgb:A 108 77 0.4598 0.3704 0.5195 1.58e-26 8tgb:B
3 1kbi:A 504 57 0.2759 0.0476 0.4211 5.09e-14 1fcb:A, 1fcb:B, 1kbi:B, 1kbj:A, 1kbj:B, 3ks0:A, 3ks0:B, 1lco:A, 1lco:B, 1ldc:A, 1ltd:A, 1ltd:B, 2oz0:A, 2oz0:B, 1qcw:A, 1qcw:B, 1sze:A, 1sze:B, 1szf:A, 1szf:B, 1szg:A, 1szg:B
4 3ozz:B 82 72 0.3103 0.3293 0.3750 5.14e-14
5 4b8n:B 90 79 0.2989 0.2889 0.3291 6.53e-14 4b8n:A, 4b8n:C, 4b8n:D
6 2ibj:A 86 72 0.3218 0.3256 0.3889 2.05e-13
7 1awp:A 86 68 0.2874 0.2907 0.3676 5.46e-13 1awp:B, 1b5m:A, 1eue:A, 1eue:B, 4hil:A, 4hil:B, 1icc:C, 3mus:A
8 3ner:B 91 78 0.3448 0.3297 0.3846 6.78e-13 3ner:A
9 2i96:A 108 72 0.2989 0.2407 0.3611 1.05e-12 4hin:A, 4hin:B, 4hin:C, 4hin:D, 2m33:A
10 2i89:A 90 78 0.3218 0.3111 0.3590 1.63e-12 2i89:B, 2i89:C, 2i89:D, 1icc:A, 1icc:B, 1icc:D, 1lj0:A, 1lj0:B, 1lj0:C, 1lj0:D, 3mus:B
11 1hko:A 104 72 0.2874 0.2404 0.3472 2.90e-12 1aqa:A, 1cyo:A, 1ehb:A, 1es1:A, 1f03:A, 1f04:A, 1i5u:A, 1ib7:A, 1j0q:A, 1jex:A, 1lqx:A, 1lr6:A, 1m20:A, 1m2i:A, 1m2m:A, 1m59:A, 1nx7:A, 1sh4:A, 1u9m:A, 1u9m:B, 1u9m:C, 1u9m:D, 1u9m:E, 1u9m:F, 1u9u:A, 3x32:A, 3x33:A, 3x34:A, 3x35:A
12 1aw3:A 94 72 0.2759 0.2553 0.3333 2.15e-11 1axx:A, 2axx:A, 1b5a:A, 1b5b:A, 1bfx:A, 1blv:A, 1do9:A, 1mny:A
13 1cxy:A 81 52 0.2184 0.2346 0.3654 1.70e-09
14 1x3x:A 82 76 0.2644 0.2805 0.3026 6.46e-08 1x3x:B
15 1sox:A 463 47 0.1954 0.0367 0.3617 1.01e-04 2a9a:A, 2a9a:B, 2a9b:A, 2a9c:A, 2a9c:B, 2a9d:A, 2a9d:B, 3hbp:A, 3hbq:A, 1sox:B
16 1mj4:A 79 46 0.1609 0.1772 0.3043 5.10e-04
17 7bwh:A 88 60 0.1839 0.1818 0.2667 5.44e-04
18 6vz6:A 77 38 0.1839 0.2078 0.4211 0.091
19 4m7x:A 273 35 0.1379 0.0440 0.3429 2.5 6avp:A, 6avp:C, 6avp:B, 6avp:D, 6awg:A, 6awg:B, 6awg:C, 6awg:D, 6awh:A, 6awh:B, 6awh:C, 6awh:D, 6awi:A, 6awi:B, 6awi:C, 6awi:D, 6awj:A, 6awj:B, 6awj:C, 6awj:D, 6ebv:A, 6ebv:B, 6ebv:C, 6ebv:D, 5elz:A, 2ews:A, 2ews:B, 5jic:A, 4m7y:A, 4m7y:B, 4nb4:A, 4nb4:B, 4nb4:C, 4nb4:D, 4nb4:E, 4nb4:F, 4nb4:G, 4nb4:H
20 3cl7:A 302 72 0.1724 0.0497 0.2083 3.4 3cl7:B, 3cl8:A, 3cl8:B
21 8exs:A 556 32 0.1609 0.0252 0.4375 6.5 8c0p:A, 8c0p:B, 8c0s:A, 8c0s:B, 8cf3:C, 8cf3:E, 8exp:A, 8exp:B, 8exq:B, 8exq:A, 8exr:B, 8exr:A, 8exs:B, 8ext:A, 8ext:B, 6o9w:B, 3q7z:A, 3q7z:B, 3q81:A, 3q81:B, 3q82:A, 3q82:B, 1xa1:A, 1xa1:B, 1xa1:C, 1xa1:D, 1xa7:A, 1xa7:B, 1xkz:A, 1xkz:B, 1xkz:C, 1xkz:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218